Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060723.seq
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    29   2.8  
SB_13899| Best HMM Match : GRP (HMM E-Value=9.5)                       27   6.4  

>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 257 YSPAAAXKRPPIPTACRLYLLC*PQKYTPRTPPC 156
           ++P+ A   P   TACR+Y +     + P TPPC
Sbjct: 827 HTPSRATSSP-YATACRIYPIRHRALHLPHTPPC 859


>SB_13899| Best HMM Match : GRP (HMM E-Value=9.5)
          Length = 365

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 324 RPHHMQ*GMCSCVDDIAVTHRIILPCGGX-KKAPDPHSLP 208
           RP  +  G  S VDD+ +   + LP  G   +APDPH LP
Sbjct: 47  RPFKVHGGNPSVVDDMGL---LSLPGDGTFLRAPDPHGLP 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,017
Number of Sequences: 59808
Number of extensions: 278543
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)