Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060723.seq
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   5.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.5  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 406 GVKADASXPTPSSQPPLVKSEG 471
           G   D S P PSS+P +    G
Sbjct: 116 GASIDDSDPDPSSEPTVHSQSG 137


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 141 SQHKLKIRGYHEYLYSNNDFKQY*K 67
           S+ K ++R   E LY+  DF+ + K
Sbjct: 102 SEQKYEVRMLFELLYNAKDFQTFYK 126


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 141 SQHKLKIRGYHEYLYSNNDFKQY*K 67
           S+ K ++R   E LY+  DF+ + K
Sbjct: 102 SEQKYEVRMLFELLYNAKDFQTFYK 126


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 153 RRSLSQHKLKIRGYHEYLYSNNDFKQ 76
           R    +HK+     + Y Y+NN++K+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNNYKK 98


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 153 RRSLSQHKLKIRGYHEYLYSNNDFKQ 76
           R    +HK+     + Y Y+NN++K+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNNYKK 98


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 153 RRSLSQHKLKIRGYHEYLYSNNDFKQ 76
           R    +HK+     + Y Y+NN++K+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNNYKK 98


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 406 GVKADASXPTPSSQP 450
           G   D S P PSS+P
Sbjct: 564 GASIDDSDPDPSSEP 578


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 162 PLLRRSLSQHKLKIRGYHEYLYSNNDF 82
           P +  SLS   +     ++Y Y+NN++
Sbjct: 79  PKIISSLSNRTIHNNNNYKYNYNNNNY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,099
Number of Sequences: 438
Number of extensions: 2786
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)