Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060720.seq
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P17501 Cluster: Major envelope glycoprotein precursor; ...   185   7e-46
UniRef50_P27427 Cluster: Envelope glycoprotein precursor; n=3; D...    70   6e-11
UniRef50_P28977 Cluster: Envelope glycoprotein precursor; n=10; ...    65   2e-09
UniRef50_A7QDF0 Cluster: Chromosome chr10 scaffold_81, whole gen...    36   0.63 
UniRef50_A0JSD7 Cluster: Peptidase M23B; n=1; Arthrobacter sp. F...    34   3.4  

>UniRef50_P17501 Cluster: Major envelope glycoprotein precursor;
           n=21; Nucleopolyhedrovirus|Rep: Major envelope
           glycoprotein precursor - Autographa californica nuclear
           polyhedrosis virus (AcMNPV)
          Length = 512

 Score =  185 bits (451), Expect = 7e-46
 Identities = 86/139 (61%), Positives = 93/139 (66%)
 Frame = +3

Query: 225 QGVLPGVCVQGGSLDPNTRVEESMKTLTVGKEDLLMXGIXQQCXVGEELIDRWGSDXXEC 404
           +G        GGSLDPNTRVEE+MKTL VGKEDLLM  I QQC VGEELIDRWGSD  +C
Sbjct: 69  KGYYQAYAYNGGSLDPNTRVEETMKTLNVGKEDLLMWSIRQQCEVGEELIDRWGSDSDDC 128

Query: 405 FRDNEGRGXWVKGQXXVKRQNNNHFAYHTCNKSWRAAFXLRKCXAGXXXXXXXXXXXXXX 584
           FRDNEGRG WVKG+  VKRQNNNHFA+HTCNKSWR      K  +               
Sbjct: 129 FRDNEGRGQWVKGKELVKRQNNNHFAHHTCNKSWRCGISTSKMYSRLECQDDTDECQVYI 188

Query: 585 XXLKGNPINVXVDTALHRD 641
              +GNPINV VDT LHRD
Sbjct: 189 LDAEGNPINVTVDTVLHRD 207



 Score = 94.7 bits (225), Expect = 2e-18
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = +1

Query: 88  HCNAQMKTGPYKIKNLDITPPKETLQKDVEITIVETDYNENV 213
           HCNAQMKTGPYKIKNLDITPPKETLQKDVEITIVETDYNENV
Sbjct: 23  HCNAQMKTGPYKIKNLDITPPKETLQKDVEITIVETDYNENV 64


>UniRef50_P27427 Cluster: Envelope glycoprotein precursor; n=3;
           Dhori virus|Rep: Envelope glycoprotein precursor - Dhori
           virus (strain Indian/1313/61) (Dho)
          Length = 521

 Score = 69.7 bits (163), Expect = 6e-11
 Identities = 35/95 (36%), Positives = 47/95 (49%)
 Frame = +3

Query: 225 QGVLPGVCVQGGSLDPNTRVEESMKTLTVGKEDLLMXGIXQQCXVGEELIDRWGSDXXEC 404
           + V  G C  GGSLD NT     +   +  + +L      Q+C  G + +D WGSD   C
Sbjct: 69  RAVWRGYCYNGGSLDKNTGCYNDLIPKSPTESELRTWSKSQKCCTGPDAVDAWGSDARIC 128

Query: 405 FRDNEGRGXWVKGQXXVKRQNNNHFAYHTCNKSWR 509
           + + +        +   K  NNNHFAYHTCN SWR
Sbjct: 129 WAEWK-MELCHTAKELKKYSNNNHFAYHTCNLSWR 162


>UniRef50_P28977 Cluster: Envelope glycoprotein precursor; n=10;
           Thogotovirus|Rep: Envelope glycoprotein precursor -
           Thogoto virus (isolate SiAr 126) (Tho)
          Length = 512

 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 30/88 (34%), Positives = 40/88 (45%)
 Frame = +3

Query: 246 CVQGGSLDPNTRVEESMKTLTVGKEDLLMXGIXQQCXVGEELIDRWGSDXXECFRDNEGR 425
           C  GG +D NT     +      +++LL+ G   QC  G+   D WGSD   C    +  
Sbjct: 71  CYNGGLVDSNTGCNARLLHYPPSRDELLLWGSSHQCSYGDICHDCWGSDSYACLGQLDPA 130

Query: 426 GXWVKGQXXVKRQNNNHFAYHTCNKSWR 509
             W   +  V+R  N  FAYH CN  WR
Sbjct: 131 KHWAPRKELVRRDANWKFAYHMCNIDWR 158


>UniRef50_A7QDF0 Cluster: Chromosome chr10 scaffold_81, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr10 scaffold_81, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 480

 Score = 36.3 bits (80), Expect = 0.63
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 94  NAQMKTGPYKIKNLDITPPKETLQKDVEITIVETDYNENV 213
           N+ +   P K+K L + PP   LQ  V +T+ E++YN N+
Sbjct: 276 NSPVAFVPIKLKGLHVIPPNHKLQVTVMLTLPESEYNRNL 315


>UniRef50_A0JSD7 Cluster: Peptidase M23B; n=1; Arthrobacter sp.
           FB24|Rep: Peptidase M23B - Arthrobacter sp. (strain
           FB24)
          Length = 445

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -2

Query: 436 TXWPRPSLSRKHSXXSLPQRSINSSPTXHCCXIPXMSKSSLPTVSVFMDSSTRVLGSSEP 257
           T  P P+L+ + +    P  ++ ++PT      P  S++  PT +   D ST     +EP
Sbjct: 362 TPTPTPTLTEQSTATVSPTEAVTATPTTEPAAEPTFSETPEPTFTATGDPSTEPTAPAEP 421

Query: 256 PCTHTPGST 230
                P  T
Sbjct: 422 TADPEPTMT 430


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,905,707
Number of Sequences: 1657284
Number of extensions: 8801116
Number of successful extensions: 23572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23507
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)