Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060720.seq
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32...    29   3.1  
06_02_0035 + 10816723-10819497,10819964-10820011                       28   5.5  
04_04_0262 - 24024451-24025080,24025421-24026320                       28   7.2  
09_06_0072 - 20682424-20682870,20683928-20684854                       27   9.6  

>04_01_0022 +
           324422-324445,324870-325265,325366-325546,325781-326072,
           326389-326461,326610-326700,326815-326894,326992-327234
          Length = 459

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 589 VQNVYXTLVGVVVALEPAXHXRSXNAARHDLLHVW 485
           VQN+  TLV V    +P       NA+R+D L +W
Sbjct: 266 VQNLPVTLVRVQSMQQPELQTNPANASRYDRLRMW 300


>06_02_0035 + 10816723-10819497,10819964-10820011
          Length = 940

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 138 HYPAQGNAAKGRGNHHR-GDGLQRKRDYW 221
           H   +G AA   G HHR GD + ++  YW
Sbjct: 242 HAAEEGGAAAAAGGHHRAGDPVLQEGHYW 270


>04_04_0262 - 24024451-24025080,24025421-24026320
          Length = 509

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 421 PSLSRKHSXXSLPQRSINSSPTXHCCXIPXMSKSSLPTVSVFMDSSTRVL 272
           P +   H   +LP RS+ +    H   +  +   S+PT+ V    + R L
Sbjct: 46  PLIGNLHQVGALPHRSLAALAARHAAPLMLLRLGSVPTLVVSTADAARAL 95


>09_06_0072 - 20682424-20682870,20683928-20684854
          Length = 457

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 139 ITPPKETLQKDVEITIVETDYNENV 213
           + PP + +Q +V +T+ E+DYN  +
Sbjct: 281 LVPPNQRMQLEVFLTLPESDYNRRL 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,802,709
Number of Sequences: 37544
Number of extensions: 260625
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)