Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060720.seq
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25503| Best HMM Match : 7tm_1 (HMM E-Value=0.004)                   29   2.4  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    28   7.4  
SB_286| Best HMM Match : M (HMM E-Value=0.39)                          28   7.4  
SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)               27   9.8  

>SB_25503| Best HMM Match : 7tm_1 (HMM E-Value=0.004)
          Length = 196

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 197 SVSTMVISTSFCSVSLGGVMSKFLI--LYGPVFICALQCPPQRQNA 66
           ++ ++++S   C+V  GG +  F +   +GP F+C  + P +R  A
Sbjct: 81  TIGSLLVSFVTCAVFAGGFLQIFGVEFQFGPHFLCVPRLPSRRMQA 126


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 116  GPVFICALQCPPQRQNAPPPKARIKQ*R 33
            GPVF CA  C P RQ   PP   ++Q R
Sbjct: 1063 GPVFPCA-TCSPTRQAGVPPLHGLRQSR 1089


>SB_286| Best HMM Match : M (HMM E-Value=0.39)
          Length = 414

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 81  RRTLQRANENGSVQN*KLGHYPAQGNAAKGRGNHHRGDGLQRK 209
           +RTL+R    G+ Q   L    ++GN  KG     R  G  +K
Sbjct: 60  KRTLKRERSKGNAQKGTLKRERSKGNTQKGTHKRERSKGNAQK 102


>SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)
          Length = 335

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 186 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLR 97
           +GD++VL+   LG     +FNF   +F ++
Sbjct: 37  EGDYNVLVMELLGPSLEDLFNFCNRKFSIK 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,789
Number of Sequences: 59808
Number of extensions: 288894
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)