Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060720.seq
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.36 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 161 SVSLGGVMSKFLILYGPVFICALQCP 84
           S +LG +MS F++ + P F+ AL  P
Sbjct: 371 STTLGIIMSAFIVCWLPFFVLALVRP 396


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 456 KRQNNNHFAYH 488
           K QNNNH+  H
Sbjct: 116 KNQNNNHYTSH 126


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 537 LXIXEVETPHATICCTCGTQSDCY 466
           L + +VET     C  CG   D Y
Sbjct: 530 LDVYKVETIGDAYCVACGLHRDTY 553


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -1

Query: 113  PVFICALQCPPQRQNAPP--PKARI 45
            P + C     PQ+Q  PP  P+ R+
Sbjct: 1270 PAYSCGTVSVPQQQQLPPSSPQPRL 1294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,632
Number of Sequences: 438
Number of extensions: 2460
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)