Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060720.seq
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    28   6.1  

>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
 Frame = +3

Query: 81  RRTLQRANENGSVQN*KLGHYPAQGNAAKGRGNHHRGDGLQ--RKRDYWLQGVLPGVCVQ 254
           R  L R    GS    + G    +G  A+GRG    GDG +  +K +   Q  +      
Sbjct: 278 RSELSRGEAEGSSVGGRGGRGRGRGRGARGRGRGRGGDGWRDDKKEEEGEQEAMR--IFA 335

Query: 255 GGSLDPNTRVE----ESMKTLTVGKEDL 326
           G S D     E    E MKTL  G E++
Sbjct: 336 GDSADGEKFAEKMGPELMKTLAEGFEEI 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,472,842
Number of Sequences: 28952
Number of extensions: 197965
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)