Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060719.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    30   0.25 
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    28   1.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   1.8  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    27   1.8  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.3  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   3.1  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   3.1  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   5.4  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   5.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   7.1  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   9.4  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +1

Query: 118 RPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRG 255
           +P   G++P  K  +KRGRPP    +  S K  DD   P  KRGRG
Sbjct: 112 KPIDEGSEPIIK--RKRGRPPKIKSSSPSTK-LDDPLKP--KRGRG 152



 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +1

Query: 79  DDGSTVVEKKGRGR-PKANGTQPESK---ELK-KRGR 174
           D+GS  + K+ RGR PK   + P +K    LK KRGR
Sbjct: 115 DEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGR 151


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +1

Query: 124 KANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKKRE 285
           K +      K  KK  + P +  T   A  +  ++    K+  G QK+  KK++
Sbjct: 218 KEDKVSDRKKSKKKPKKTPVSNSTASQASENASDKKTKEKKSSGKQKIASKKKD 271


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 160  KKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKKRESRARVKVEVVD 318
            +KRGRP   T +  S  +   +++ +A+ GR  +  P  K+++  R  +E+ +
Sbjct: 1477 RKRGRPRKKTNSGSSLSTPLSQESSLARSGR--KNTPSYKQKALRRYCMEIFE 1527


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 160 KKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKKRESRARVKV 306
           K+RGRPP  +     +   DDE+     R R     PR    S +   V
Sbjct: 21  KRRGRPPKGSYAAYGSSDDDDEEYSGRTRRRNRNTRPRVSAPSSSSTVV 69


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 196 KDSAKSSDDEQAPVAKRGRGDQKVPRKKRESRARV 300
           ++ +++ D E+   ++   G+QKVP+ K E RAR+
Sbjct: 538 REQSQNEDHEKNVGSQLFVGNQKVPQDKWEKRARI 572


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = +1

Query: 73   MSDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGR 252
            ++++ + + EK+ R R      Q   +E+ +  R      ++D    SDDE+    K+ +
Sbjct: 886  LAEEEALLKEKQERERQLQEERQKMQEEVLE-WRKSQQKASEDDMSLSDDEEKQSGKKKK 944

Query: 253  GDQKVPRKKRESRAR 297
             D    RKKR+S+++
Sbjct: 945  KD----RKKRKSKSK 955


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -1

Query: 236 TGACSSSEDLAESFVLVAAGGRPRFLSSFDSGCVPLAFG 120
           TG C    +    F +    G    L  F  GC+  +FG
Sbjct: 628 TGVCIEETEKRPVFTMFGISGMGNHLQIFGGGCICFSFG 666


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 175 PPAATRTKDSAKSSDDEQAPVAKRGRGDQK 264
           P  A +  +  K SDD Q P+A +  G +K
Sbjct: 117 PEIAEKQVEDRKLSDDSQKPLAPKANGKEK 146


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 76  SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAK 210
           SD    VV++K   R + N  +  S  ++K+G  PAA  TK +AK
Sbjct: 384 SDGIHLVVDEKSNFREE-NFQRAMSALMEKQGDDPAAMATKGNAK 427


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 142 PESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKKRESR 291
           P  KEL    R      T  S + SD+E  P  K+ +   +V ++ ++S+
Sbjct: 255 PNLKELIASSRKVVTKETASSKRKSDEESLPSQKKQK-KVEVAKESKDSK 303


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 525 LVNSHVSSNLLNYRDSTTFSIEIISPKY 608
           L+++ ++SN  NY D+   S+ +  P Y
Sbjct: 462 LLDTSINSNWCNYEDTVQVSVRLNRPMY 489


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 531 NSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF 629
           N  +S + L YR+S  F I   +P  +  +G+F
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNPSPAGSEGIF 880


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 128 PMEHNLSRKNLKNEVGLQLPPE 193
           P E N++ +N+KNE    +P E
Sbjct: 45  PFESNINIRNIKNEESYDIPNE 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,309
Number of Sequences: 5004
Number of extensions: 44520
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)