Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060719.seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       30   0.022
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.27 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +1

Query: 79  DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGD 258
           +D  T +E+ GRG+ + +G          RGR     + KD   ++D E       G  D
Sbjct: 69  NDKKTDIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYEDNDY---GNQD 125

Query: 259 QKVPRKKRESRAR 297
            +  R+K+   AR
Sbjct: 126 NRNDRRKKTFAAR 138


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 248 PRLATGACSSSEDLAESFVLVAAGGRPRFLSSFD 147
           P++ T   S    +A +F+L    G PR +SSFD
Sbjct: 315 PQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFD 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +1

Query: 100  EKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKK 279
            +++ + +P+    Q + ++ ++RG       T D    + +E+A  + +GR   K+P  K
Sbjct: 834  QQQQQQQPQQQQQQQQQQQQQQRG-----PMTNDDFNPNIEEEASDSAQGRAILKIPSYK 888

Query: 280  RES 288
              S
Sbjct: 889  PAS 891


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 180 WRPTSFFK 157
           WRP SFFK
Sbjct: 119 WRPDSFFK 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,223
Number of Sequences: 438
Number of extensions: 3187
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)