Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060719.seq
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51770.1 68418.m06419 protein kinase family protein contains ... 33 0.12
At5g26020.1 68418.m03096 hypothetical protein 32 0.29
At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase famil... 32 0.38
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 30 1.2
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp... 30 1.5
At1g56660.1 68414.m06516 expressed protein 29 2.7
At4g02720.1 68417.m00368 expressed protein temporary automated f... 29 3.5
At1g77310.1 68414.m09004 wound-responsive protein, putative simi... 29 3.5
At3g28925.1 68416.m03612 hypothetical protein 28 4.7
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 28 4.7
At3g17890.1 68416.m02279 expressed protein 28 4.7
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 28 4.7
At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y p... 28 4.7
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual... 28 4.7
At4g15950.1 68417.m02421 expressed protein 28 6.1
At1g16870.1 68414.m02037 mitochondrial 28S ribosomal protein S29... 28 6.1
At3g28770.1 68416.m03591 expressed protein 27 8.1
At1g06840.1 68414.m00729 leucine-rich repeat transmembrane prote... 27 8.1
>At5g51770.1 68418.m06419 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 654
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 151 KELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKKR 282
KEL KR + +T +S SDD V +R GD +V RKKR
Sbjct: 420 KELAKRMKKKKKKKTLESEFYSDDVSGSVDQRRHGDGEVYRKKR 463
>At5g26020.1 68418.m03096 hypothetical protein
Length = 241
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 124 KANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKKRESRARVK 303
+AN SKELK++ R T K + E + +RG+GD+ K E R + +
Sbjct: 90 QANDEAGGSKELKRKVRDETGTPMTQRKKVCEPEASKTQRRGKGDE-ASASKTERRKKSE 148
Query: 304 VE 309
E
Sbjct: 149 AE 150
>At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 390
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 100 EKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAP---VAKRGRGDQKVP 270
EK+ G +P KK P + T+T++S DD +A V +GRG +
Sbjct: 313 EKEDESAKSKKGQKPRGGRGKK---PASKTKTEESDDDGDDSEAEEEVVKPKGRGTKPAI 369
Query: 271 RKKRESRA 294
++K E +A
Sbjct: 370 KRKSEEKA 377
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 70 TMSDDGSTVVEKKGRGRPKANG----TQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 237
T S +K+ G+ K + T P++ +K+ PA + KS E+ +
Sbjct: 613 TKSSPPKKATQKRSAGKRKKSDDDSDTSPKASSKRKKTEKPAKEQAAAPLKSVSKEKPVI 672
Query: 238 AKRGRGDQKVPRKKRESRARVKVEVVD 318
KRG G K + K S +K ++D
Sbjct: 673 GKRG-GKGK-DKNKEPSDEELKTAIID 697
>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
component-related / COG complex component-related
contains weak similarity to Conserved oligomeric Golgi
complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
Length = 836
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -1
Query: 344 WRWCIFAWPSTTSTFT--LALDSRFFLGTFWSPLPRLATG-ACSSSEDLAESFVLVAAGG 174
W+WC+ A+P T L +++ LG + LATG A ++ LA+ + + +G
Sbjct: 291 WKWCMVAFPDDYMTLVPKLLVETMGVLGASFVSRLNLATGDAVPETKALAKGVMDLLSGD 350
Query: 173 RPR 165
P+
Sbjct: 351 LPK 353
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +1
Query: 79 DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGD 258
D+ + +KK +G+ K G +PE ++ K+ T+ D+ + D++A K G+
Sbjct: 275 DESTEKEDKKLKGK-KGKGEKPEKEDEGKK------TKEHDATEQEMDDEAADHKEGK-- 325
Query: 259 QKVPRKKRESRARVKVEVVD 318
+KK + +A+ K V+D
Sbjct: 326 ----KKKNKDKAKKKETVID 341
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 79 DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSS-DDEQAPVAKRGRG 255
DD S E+KG+ + ++ ES L+ R R ++R+K K S D +
Sbjct: 90 DDNSKGKERKGK-----SDSESESDGLRSRKRKSKSSRSKRRRKRSYDSDSESEGSESDS 144
Query: 256 DQKVPRKKRESRARVK 303
+++ R++R+S ++ K
Sbjct: 145 EEEDRRRRRKSSSKRK 160
>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
to wound-responsive protein 14.05 (GI:16506638)
[Castanea sativa]
Length = 699
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 70 TMSDDGSTVVEKKG-RGRPKANGTQPESKELKK---RGRPPAATRTKDSAKSS 216
T S + +K G GRPK + + + L+K RPPAAT +D+ SS
Sbjct: 326 TESKTSIQISKKSGSNGRPKYSTLEKAIRNLEKLVAESRPPAATENQDADISS 378
>At3g28925.1 68416.m03612 hypothetical protein
Length = 247
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 148 SKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPRKKR 282
++EL +GR + +S K E K G +QK RKK+
Sbjct: 41 NRELSDKGRKSCSNHLYESMKQRSSESGKEVKLGCEEQKKHRKKK 85
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Frame = +1
Query: 103 KKGRGRPKANGTQPESKE-----------LKKRGRPP----AATRTKDSAKSSDDEQAPV 237
K+G GRP+ NG+ + +K+RGRPP A + K + SS P
Sbjct: 233 KRGPGRPRKNGSAAPATAPIVQASVMAGIMKRRGRPPGRRAAGRQRKPKSVSSTASVYPY 292
Query: 238 AKRGRGDQKVPRKKRESRARVKVEVVDG 321
G + PR+ + + V V V G
Sbjct: 293 VANGARRRGRPRRVVDPSSIVSVAPVGG 320
>At3g17890.1 68416.m02279 expressed protein
Length = 153
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 130 NGTQPESKELKKRGRPPAATRTKD-SAKSSDDEQAPVAKRGRGDQK 264
NG+QPE+ + K RP +TK+ DE V ++ R + K
Sbjct: 21 NGSQPEAPKTKAEKRPKRVQKTKEKDLNLKSDEPKRVPRKIREEAK 66
>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
(API5)-related contains weak hit to Pfam profile
PF05918: Apoptosis inhibitory protein 5 (API5)
Length = 660
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 145 ESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRG-RGDQKVPRKKRESRARVKVEV 312
E+ E ++ + KDS +++ P AKRG D K R + E V ++V
Sbjct: 594 EADENDRKDAESEESEEKDSENEEEEDYIPKAKRGLTKDPKPKRSRTEDPTMVSIKV 650
>At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y
protein nearly identical to high-mobility-group protein
HMG-I/Y protein [Arabidopsis thaliana] GI:1429211;
contains Pfam profiles PF00538: linker histone H1 and H5
family, PF02178: AT hook motif
Length = 204
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Frame = +1
Query: 106 KGRGRP---KANGTQPESKEL----KKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQK 264
+ RGRP K P+ K + + RGRPP RT ++ + A RG +
Sbjct: 131 RSRGRPPKPKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGR 190
Query: 265 VPRKK 279
P+ K
Sbjct: 191 PPKVK 195
>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
specificity kinase 1 (ADK1) [Arabidopsis thaliana]
gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
and gi:1216483. Note: differences between cDNAs in the
11th exon, possibly due to errors or alternative
splicing.
Length = 471
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 172 RPPAATRTKDSAKSSDDEQAPVAKRGRGDQKVPR 273
R PA + T+D + S + P++K GD + PR
Sbjct: 350 RHPATSTTRDRSASRNSVDGPLSKHPPGDSERPR 383
>At4g15950.1 68417.m02421 expressed protein
Length = 160
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +1
Query: 100 EKKGRG-----RPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGDQK 264
EK G+G + K G S +LKK G PPA + + + Q+ AK G+ D+
Sbjct: 3 EKGGKGLKSSLKSKDGGKDGSSTKLKK-GTPPANYKILNVSSDQQPFQSSAAKCGKSDKP 61
Query: 265 VPRKK 279
K
Sbjct: 62 TKSSK 66
>At1g16870.1 68414.m02037 mitochondrial 28S ribosomal protein
S29-related contains weak similarity to
Swiss-Prot:P51398 mitochondrial 28S ribosomal protein
S29 (MRP-S29, Death-associated protein 3, DAP-3) [Homo
sapiens]
Length = 480
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 145 ESKELKKRGRPPAATRTKDS---AKSSDDEQAPVAKRGRGDQKVP 270
E K+ K +G P A ++ A DD +A AKR D+K+P
Sbjct: 68 EGKKSKPKGGDPGAAGAEEGEFGAAGGDDLEAGRAKRLADDEKIP 112
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +1
Query: 76 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRG 255
S+D ++ +K K + T+ E+K+ KK+ + K K S++ ++ K
Sbjct: 1002 SEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQD-----KKREEKDSEERKSKKEKEESR 1056
Query: 256 DQKVPRKKRESRARVKVE 309
D K +K+ E++ + + E
Sbjct: 1057 DLKAKKKEEETKEKKESE 1074
>At1g06840.1 68414.m00729 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GB:BAA11869 GI:1389566 from [Arabidopsis thaliana]
Length = 939
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 241 KRGRGDQKVPRKKRESRARVKVEVV 315
KR RG V R+KR S+A +K+E V
Sbjct: 572 KRMRGYSAVARRKRSSKASLKIEGV 596
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,691,051
Number of Sequences: 28952
Number of extensions: 223042
Number of successful extensions: 878
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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