Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060718.seq
         (472 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   2.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   4.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   4.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   4.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   4.3  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
 Frame = -1

Query: 352 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFGDHLL-------AHAVGLPRVLGHRNV 203
           HP  T+ YH   H+    F   H  +      FG  ++        HA      L    +
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFGPFIVRVPEEDNPHAKLYDYDLSSHVI 217

Query: 202 NIIDQVRTDG 173
            I+D  + DG
Sbjct: 218 TILDWTKEDG 227


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,100
Number of Sequences: 336
Number of extensions: 1872
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)