Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060718.seq
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    98   5e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    98   5e-22
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.3  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   3.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   4.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   7.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 98.3 bits (234), Expect = 5e-22
 Identities = 43/48 (89%), Positives = 44/48 (91%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTK 399
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR  RMFAPTK
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTK 106



 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 31/58 (53%), Positives = 41/58 (70%)
 Frame = +2

Query: 80  LSVARPLVSVYSEKSXTVQGAAKPLPFVFKAXIRPDLVNDVHVSMSKNSRQPYCVSKE 253
           ++ ARP VS+Y+ K  +V      LPFVFKA IRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 98.3 bits (234), Expect = 5e-22
 Identities = 43/48 (89%), Positives = 44/48 (91%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTK 399
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR  RMFAPTK
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTK 106



 Score = 67.7 bits (158), Expect = 8e-13
 Identities = 32/58 (55%), Positives = 41/58 (70%)
 Frame = +2

Query: 80  LSVARPLVSVYSEKSXTVQGAAKPLPFVFKAXIRPDLVNDVHVSMSKNSRQPYCVSKE 253
           ++ ARP VS+YS K  +V      LPFVFKA IRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 141 APCTVXLFSEYTDTKGRATDRLISLL 64
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 98  KVG-LPIDSFRYFSEAIPLKY-TLIAVI 21
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 79  SIGSPTFSVGVFREEXDGAGCSQAPPVRVQGXHPSGP 189
           SI SP+ SVG   +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 218  KNSRQPYCVSKEVVTKPVLNHGVLDVLSP 304
            ++  +PY ++ +    P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,150
Number of Sequences: 5004
Number of extensions: 29234
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)