Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060718.seq
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 101 2e-22
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 101 2e-22
10_02_0199 + 6668902-6669293,6669825-6669882 37 0.007
11_01_0748 + 6299776-6300042 31 0.35
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 29 1.4
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 1.4
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.5
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955 29 2.5
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 2.5
02_04_0457 + 23093020-23093343,23093798-23093806 29 2.5
08_01_0488 + 4277482-4277988 28 4.4
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 27 5.8
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 5.8
06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709 27 7.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 101 bits (243), Expect = 2e-22
Identities = 44/48 (91%), Positives = 46/48 (95%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTK 399
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG RMFAPTK
Sbjct: 63 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK 110
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 92 RPLVSVYSEKSX--TVQGAAKPLPFVFKAXIRPDLVNDVHVSMSKNSRQPYCVSK 250
RPLVSV + + T ++ L VF+A +RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 101 bits (243), Expect = 2e-22
Identities = 44/48 (91%), Positives = 46/48 (95%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTK 399
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG RMFAPTK
Sbjct: 62 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK 109
Score = 47.6 bits (108), Expect = 5e-06
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 83 SVARPLVSVYS-EKSXTVQGAAKPLPFVFKAXIRPDLVNDVHVSMSKNSRQPYCVSK 250
+ ARPLVSV + E A +P V +A IRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 37.1 bits (82), Expect = 0.007
Identities = 22/47 (46%), Positives = 24/47 (51%)
Frame = +1
Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXR 381
RE GGG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>11_01_0748 + 6299776-6300042
Length = 88
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 223 LEAALL--REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 354
LEA L+ R GGG + E+ G GRAVA + R H +G GA
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGA 61
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREEXDGAGCSQAPPVRVQGXHPSGPGQ*CSRF 210
ASL N + P+F V G SQA V + G H G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 340 TYEYHH-HGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGH 212
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAGG-MVNYGGGAPYYAAH 184
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREEXDGAGCSQAPPVRVQGXHPSGPGQ*CSRF 210
ASL N I +PTF +G + G S + + G H G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
Length = 184
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
GGG WG+G + + GGG + SG G G
Sbjct: 38 GGGGSNGGSGWGSGSG-SGYGQASGGGAYASGGGGAG 73
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 250 GGGHQTSAES-WGTGRAVARIPRVRGGGTHRSGQGAFGN 363
GGG+ E+ +G GR RGGG R G+G G+
Sbjct: 168 GGGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>08_01_0488 + 4277482-4277988
Length = 168
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = +1
Query: 223 LEAALLREQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTKP 402
L AA EQG G +T+A V R P GG R G G G + AP +P
Sbjct: 93 LAAASTPEQGNGPKTNA--------VLRRPTPPGGAGPREGSGGRGGVIHAVADSAPQRP 144
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 197 DVHVSMSKNSRQPYCVSKEVVTKPVLNHGVL 289
DVH+ +++NSR Y ++K++V HGVL
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGVL 827
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 349 PDRTYEYHHHGHAEFGRQHVQYPMIQH 269
P + +HHHGH G H Q QH
Sbjct: 33 PQEHHHHHHHGH--HGHHHEQQQQQQH 57
>06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709
Length = 71
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 228 LEFLDIET*TSLTRSGRMXALNTNGRGLAAPCTVXLFSE 112
LE L E S+ R GR+ + G+G PC+ ++ E
Sbjct: 28 LEALQEEESVSVQRRGRVENSSREGKGRVMPCSAYVWGE 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,574
Number of Sequences: 37544
Number of extensions: 276886
Number of successful extensions: 923
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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