Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060718.seq
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               108   2e-24
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     30   0.84 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   2.6  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   27   7.8  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                27   7.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  108 bits (260), Expect = 2e-24
 Identities = 59/123 (47%), Positives = 69/123 (56%)
 Frame = +1

Query: 103 VGVFREEXDGAGCSQAPPVRVQGXHPSGPGQ*CSRFYVQELEAALLREQGGGHQTSAESW 282
           + VF E  + AG +  P V      P       S     + +   + +  G HQTSAESW
Sbjct: 6   ITVFNENGESAGQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAG-HQTSAESW 64

Query: 283 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTKPXXXXXXXXXXXXXXAGLCGS 462
           GTGRAVARIPRVRGGGTHRSGQGAFGNMCRG RMFAPTK                 +C +
Sbjct: 65  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 124

Query: 463 VAA 471
           +AA
Sbjct: 125 LAA 127


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 388 RTYVXHDTCXRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 263
           R Y  H  C   H    Y Y+ H H  + R H  YP  +H++
Sbjct: 15  RCYRHHHYCCYCH--HRYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 352 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
           HP  T+ YH H      R H Q+P + H +  H
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQH 437



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 355 RHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGHRNVNII 194
           +HP  T+ YHH  H +   ++ Q+P + H +  H   H + +  +  H+ + +I
Sbjct: 415 QHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRY--HQQTHKLLIVIINTHKLLIVI 465



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 355 RHPDRTYEYHHHGHAEFGRQHVQYPMIQH 269
           +HP  T+ YH H      R H Q+P + H
Sbjct: 234 QHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261


>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 187 PGQ*CSRFYVQELEAALLREQG-GGHQTSAESWGTGRAVARIPRVRGGGT 333
           P Q C   +    E+ +L   G GG+   AE  G     ARI  +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 340 TYEYHHHGHAEFGRQHVQYPMI-QHWFGDHLLAHAVGLP-RVLGHRNVN 200
           +Y++HHHG  E   Q V    I + W    L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 352 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
           H    +++HHH H     QH  +    H   DH
Sbjct: 9   HDHHHHDHHHHDHQHHDHQHHDHQHHDHHHHDH 41


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 373 HDTCXRRHPDRTYEYHHHGHAEFGRQH 293
           H     RH  R + +HHH H E+ R+H
Sbjct: 326 HQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 156  GRGLAAPCTVXLFSEYTDTKGRATDRLI 73
            G+GL   C+V L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXR 381
           QGGG+++    +G G +       RGGG +  G+G  G+   G R
Sbjct: 97  QGGGYRSGGGGYG-GSSRGGYGGGRGGGGYGGGRGGGGSYGGGRR 140


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +1

Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRS-GQGAFG 360
           E G G +     W T R VA   RVR  G  R   QGA G
Sbjct: 258 EGGRGVREGLGYWATARVVAGRKRVRATGPRRGWSQGARG 297


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 358 RRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
           R+H +R   +HHH        H  +P   H+   H
Sbjct: 191 RQHYNRHRRHHHHHRHRHHHHHPNHPYSHHYPNHH 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,097
Number of Sequences: 59808
Number of extensions: 256949
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)