Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060718.seq
         (472 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsiv...    25   1.8  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   3.1  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   4.1  
AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         22   9.4  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    22   9.4  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    22   9.4  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    22   9.4  

>AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsive
           protein 1 protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 82  IGSPTFSVGVFREEXDGAGCSQAPPVRVQGXHPSGPGQ*CSRFYVQELEAALLREQGGGH 261
           +G  T+  G +R   D +G +  PP+   G  P+GP      FY      A L   G  +
Sbjct: 302 VGIATYGRG-WRLVGD-SGITGVPPIPADGPSPAGPYTNVPGFYSFGEVCAKLPNPGNAN 359

Query: 262 QTSAE 276
              AE
Sbjct: 360 LKGAE 364


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 188 LVNDVHVSMSKNSRQPYCVSKEVVTKPVLNHGVLDVLSPEFR 313
           L++D+H     N R  Y VSK+V      ++ +  V   E R
Sbjct: 97  LLSDMHRPPENNGRWAYDVSKKVAVVATGSYPIQRVWGSELR 138


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 358 RRHPDRTYEYHHHGH 314
           ++HP  +  +HHH H
Sbjct: 175 QQHPGHSQHHHHHHH 189


>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 349 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGHRNVNIIDQVRTDGR 170
           PD+T  Y  +G  E   +HV+  + +    D   A  V L  V+G    +   ++   GR
Sbjct: 48  PDKTAAYVAYGGQETLVEHVEVLVHKQLIWDTASAGQVPLGAVVGGHTSD--GEILYVGR 105

Query: 169 LEHE 158
             HE
Sbjct: 106 AYHE 109


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 151 PPVRVQGXHPSGPGQ 195
           PP+ +QG  P GP Q
Sbjct: 300 PPMPMQGGAPGGPPQ 314


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 127 DGAGCSQAPPVRVQGXHPSGPG 192
           DG     +PP+ V G   S PG
Sbjct: 153 DGLHSIPSPPITVSGSDMSSPG 174


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 169 GXHPSGPGQ*CSRFYVQELEAALLREQG-GGHQTSAE 276
           G  P   G+  +RF+ ++L   +LR+Q   GH  + E
Sbjct: 224 GHSPVNGGRWSTRFFEKDLFVEILRDQDIFGHVATPE 260


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,785
Number of Sequences: 2352
Number of extensions: 8947
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41245467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)