Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060718.seq
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    96   1e-20
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical...    28   2.9  
AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical...    28   2.9  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    28   2.9  
Z68882-12|CAA93103.2|  204|Caenorhabditis elegans Hypothetical p...    27   9.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 43/48 (89%), Positives = 43/48 (89%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTK 399
           G Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG  MFAP K
Sbjct: 58  GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLK 105



 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 24/53 (45%), Positives = 33/53 (62%)
 Frame = +2

Query: 89  ARPLVSVYSEKSXTVQGAAKPLPFVFKAXIRPDLVNDVHVSMSKNSRQPYCVS 247
           ARPLV+VY EK    Q   + LP VF+  IRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 185 DLVNDVHVSMSKNSRQPYCVSKEVVTKPVLNHGVLDVLS 301
           D ++DVH+S S    Q     K V   P L H     LS
Sbjct: 209 DRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39b protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 105 HIEYIVITHWHGDHV 119


>AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39a protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 71  HIEYIVITHWHGDHV 85


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +1

Query: 88  SPTFSVGVFREEXDGAGCSQAPPVRVQGXHPSGPGQ*CSRFYVQELEAALLREQGGGHQT 267
           SPT +  V + +  GAG  QA  ++ Q   PSG G            A L R  GGG+  
Sbjct: 85  SPTTNGMVIQAKTPGAGVIQARHMQSQQSFPSG-GPARVLMNRSSTNAGLSRMVGGGYDQ 143

Query: 268 SAESWGTGRAVARIPRVRGGGT 333
              +   GR +     VR  G+
Sbjct: 144 QLPTAPNGRLMIPSTAVRVPGS 165


>Z68882-12|CAA93103.2|  204|Caenorhabditis elegans Hypothetical
           protein C47E12.9 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 382 YVXHDTCXRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHW 266
           Y+ HD   +   + TYE++   + E  R+ V   + Q+W
Sbjct: 33  YILHDYAKQWIVELTYEFNEQNNLEDSRKTVMKAIDQNW 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,351,671
Number of Sequences: 27780
Number of extensions: 187828
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)