Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060718.seq
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   100   1e-21
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   100   1e-21
At1g76010.1 68414.m08825 expressed protein                             30   0.91 
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    29   2.1  
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins...    29   2.1  
At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ...    27   4.8  
At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ...    27   4.8  
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to...    27   4.8  
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein...    27   6.4  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 43/48 (89%), Positives = 45/48 (93%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTK 399
           GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRG RMFAPTK
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 112



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +2

Query: 83  SVARPLVSVYSEKSX--TVQGAAKPLPFVFKAXIRPDLVNDVHVSMSKNSRQPYCVSKE 253
           + ARPLV+V        T Q     LP V  A +RPD+VN VH  +S NSRQPY VSK+
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 43/48 (89%), Positives = 45/48 (93%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGXRMFAPTK 399
           GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRG RMFAPTK
Sbjct: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 111



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +2

Query: 74  MSLSVARPLVSVYSEKSX--TVQGAAKPLPFVFKAXIRPDLVNDVHVSMSKNSRQPYCVS 247
           M+ + ARPLV++ +      T Q +   LP V  A +RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 248 KE 253
           K+
Sbjct: 61  KK 62


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +1

Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 375
           QG G     +  G GR   R  R RGGG  R G G F N   G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
           R  GGG+  S+  +G GR+     R   G + RSG G+FG
Sbjct: 512 RSGGGGYGGSSGGYGGGRSGGSSNRY-SGDSDRSGFGSFG 550


>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
           Arabidopsis thaliana
          Length = 159

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 247 QGGGHQTSAESWGT---GRAVARIPRVRGGGTHRSGQGAFG 360
           +GGG  +S    G+   G  +  IP + GGGTHRSG  + G
Sbjct: 99  RGGGGSSSRGGGGSSSRGGGLRPIP-IYGGGTHRSGHHSSG 138


>At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9
           (SPL9) identical to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 369

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 348
           E GGG   S+ S G         RVRGGG+ +SGQ
Sbjct: 41  EDGGGGSGSSSSGGRSNR-----RVRGGGSGQSGQ 70


>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
           (SPL9) identical to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 375

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 348
           E GGG   S+ S G         RVRGGG+ +SGQ
Sbjct: 41  EDGGGGSGSSSSGGRSNR-----RVRGGGSGQSGQ 70


>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
           glycine-rich protein; atGRP (GI:259447) [Arabidopsis
           thaliana]
          Length = 145

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR 372
           QGGG +      G GR      R +GGG  + G G+ G+ CR
Sbjct: 79  QGGGGRYQG---GGGRYQGGGGRYQGGGGRQGGGGSGGSYCR 117


>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
           similar to NAM family proteins GP|12751304|,
           GP|6223650|, GP|9758909 - Arabidopsis
           thaliana,PIR2:T04621
          Length = 498

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -1

Query: 337 YEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGHRNVNIID 191
           +++HHH H +  ++H  + + Q     H ++  +     L H ++NI+D
Sbjct: 359 HDHHHHHHQQQQQRHHAFNISQ---PTHPISTIISPSTSLHHASINILD 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,911
Number of Sequences: 28952
Number of extensions: 180814
Number of successful extensions: 505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)