Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060717.seq
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    26   0.23 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.5  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   6.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.6  

>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 468 LETVYDMISLFQPELHQEVGPKFHTDQSLTSHNQTVRPCMPEIQV 334
           L   Y   + + P+LH   GP  H        + T   C P++QV
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCNPQLQV 119


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 456 YDMISLFQPELHQEVGPKFHTDQSLTSHNQTVRPCMPEIQVAPIQIL*QVSQRNFSRFCK 277
           YD   +  P  H++    FH   + T  N T +     +++    +L Q  Q +   FC 
Sbjct: 432 YDFYKMNHPVYHKDPHYGFHNVTNTTLQNLTPQLNYISMKLQSFPLLSQRHQIDAKMFCN 491

Query: 276 AAIV 265
            + V
Sbjct: 492 ESSV 495


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 468 LETVYDMISLFQPELHQEVGPKFH 397
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 468 LETVYDMISLFQPELHQEVGPKFH 397
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 397 MKFWAYLLVQLRLK*RNHIVNSL*FCILTKKLVT 498
           M+ W YLL  L     N     L  C L   +VT
Sbjct: 36  MRSWYYLLTNLTYNNTNRKYYWLNVCCLNLSIVT 69


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 468 LETVYDMISLFQPELHQEVGPKFH 397
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 602 LMLQVHQGYHXFPN 561
           ++  +H GYH F N
Sbjct: 484 VLYTIHMGYHGFHN 497


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 218  PKDVSVQIVLANTN 259
            PK+ + QI+LAN N
Sbjct: 1596 PKEDTFQIILANLN 1609


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,580
Number of Sequences: 336
Number of extensions: 3346
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)