Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060717.seq
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 61  NDLILTMGGQKFEYDESGSTF 123
           +DLILT+G ++F + E  + F
Sbjct: 267 DDLILTLGKKEFSHYEHQNVF 287


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = +3

Query: 114 IYILLFCFIISCI--NISTSYILLLA*KTKRRSCKISRKMSVSKLC*QTLIIEQSQPYKS 287
           I ++L   I+  +  NI     + L  K +R    +   ++VS LC   L++  +  Y+ 
Sbjct: 44  IALVLGSIIVGTVIGNILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEI 103

Query: 288 VKNFFVKLAIVSGWVLLGFLAYKVSQFDYEMSNFDPY 398
             N+     +   WV    L+   S  +  M + D +
Sbjct: 104 SGNWSFGTIMCDLWVSFDVLSCTASILNLCMISVDRF 140


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 373 MRCQTLIRMKFWAYLLVQLRLK*RNHIV 456
           ++C T++ + FW++++  + L   N I+
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLWFINKII 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 139  SFLALILVPATFYY 180
            +F+ L LVPAT+Y+
Sbjct: 1518 NFVVLDLVPATWYH 1531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,570
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)