Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060716.seq
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.23 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.23 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   3.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 336 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTP---GYGDAIDNTDCFRS 488
           ++P+  E + Q V L     E    GVK+ L    T    GY D   + + F+S
Sbjct: 334 IVPEKEESSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKS 387


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 336 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTP---GYGDAIDNTDCFRS 488
           ++P+  E + Q V L     E    GVK+ L    T    GY D   + + F+S
Sbjct: 334 IVPEKEESSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKS 387


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 RVSSSPYGGRGKWT 280
           +V  +PYGGR  WT
Sbjct: 87  KVYPTPYGGRLVWT 100


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 RVSSSPYGGRGKWT 280
           +V  +PYGGR  WT
Sbjct: 401 KVYPTPYGGRLVWT 414


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 RVSSSPYGGRGKWT 280
           +V  +PYGGR  WT
Sbjct: 634 KVYPTPYGGRLVWT 647


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 RVSSSPYGGRGKWT 280
           +V  +PYGGR  WT
Sbjct: 634 KVYPTPYGGRLVWT 647


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 507 RQCIELWIENNPCY 466
           RQ + +W+ +NP Y
Sbjct: 657 RQTLAMWLNHNPNY 670


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 251 SPYGGRGKWT 280
           +PYGGR  WT
Sbjct: 666 TPYGGRLVWT 675


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 251 SPYGGRGKWT 280
           +PYGGR  WT
Sbjct: 666 TPYGGRLVWT 675


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 251 SPYGGRGKWT 280
           +PYGGR  WT
Sbjct: 666 TPYGGRLVWT 675


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 251 SPYGGRGKWT 280
           +PYGGR  WT
Sbjct: 666 TPYGGRLVWT 675


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,248
Number of Sequences: 336
Number of extensions: 2649
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)