Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060716.seq
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 93 3e-20
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 87 2e-18
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 87 2e-18
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 83 4e-17
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 68 1e-12
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 66 5e-12
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 44 1e-05
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 33 0.035
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 30 0.24
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.32
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 29 0.43
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 29 0.56
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.74
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 0.98
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 1.7
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 1.7
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 27 2.3
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 26 4.0
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 26 5.2
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 6.9
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 25 6.9
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 9.1
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.1
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 25 9.1
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 93.1 bits (221), Expect = 3e-20
Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Frame = +3
Query: 222 QKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYP---ERVIPDATEKTNQTVKLDAST 392
++ ++GF +++V+GESG GKSTLVN+L D+YP + + D TV +++S
Sbjct: 87 RRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDFGVNPEPTVMINSSA 146
Query: 393 VEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDFFE 530
VEI E G+ L+L V+DTPG+GD IDNTDC++ ++ I+ + E
Sbjct: 147 VEIVENGISLQLNVIDTPGFGDFIDNTDCWQPVLTDIEGRYDQYLE 192
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 184 GYVGFANLPNQVHRKSVKKGFEFTLWWSGKV-DWANLLWSTLCS*PIYTLNE*SL 345
GYVGFA+LPNQ HR+ V++GF F + G+ + L +TL + +Y + SL
Sbjct: 74 GYVGFASLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSL 128
Score = 33.1 bits (72), Expect = 0.035
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 509 QFERFLRDESGLNRRNIVDNRIHCCFYFISPFXHRVKPLIL 631
+++++L E R I D R+H C +FI P H + + L
Sbjct: 186 RYDQYLELEKHNPRSTIQDPRVHACIFFIQPTGHAISAMEL 226
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 87.0 bits (206), Expect = 2e-18
Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 4/103 (3%)
Frame = +3
Query: 228 ICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLY----PERVIPDATEKTNQTVKLDASTV 395
+ + G LM+ GESGLGK+T N+LF T + PE+V EKT V+++ +
Sbjct: 22 VSRNGVAFTLMLCGESGLGKTTFCNTLFSTTIKSHMGPEKVRAKHAEKT---VEIEITKA 78
Query: 396 EIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDF 524
E+EE+ LRLTV+DTPG+GD I+N+ C+ S++++I+D + +
Sbjct: 79 ELEEKNFHLRLTVIDTPGFGDFINNSGCWESVVEFIEDQHESY 121
Score = 43.2 bits (97), Expect = 3e-05
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 509 QFERFLRDESGLNRRNIVDNRIHCCFYFISPFXHRVKPLIL 631
Q E ++R + +RR I+D RIH C YF+ P + V+P+ L
Sbjct: 117 QHESYMRQDQQPDRRKIIDMRIHACLYFLRPVRNGVRPMDL 157
Score = 33.9 bits (74), Expect = 0.020
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 169 NLETPGYVGFANLPNQVHRKSVKKGFEFTLWWS-----GKVDWANLLWST 303
N E +VG A+LPNQ H+ + G FTL GK + N L+ST
Sbjct: 2 NEEETNFVGIADLPNQRHKIVSRNGVAFTLMLCGESGLGKTTFCNTLFST 51
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 87.0 bits (206), Expect = 2e-18
Identities = 40/101 (39%), Positives = 63/101 (62%)
Frame = +3
Query: 222 QKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 401
+K+ ++GF+ ++MVVG SG GKSTL+N+LF L + D QT ++ ++ +
Sbjct: 24 RKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEIHVTSQVV 83
Query: 402 EERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDF 524
E V+L+L ++DTPGYGD I+N C+ II+YI D +
Sbjct: 84 RENRVQLQLNLIDTPGYGDQINNDKCWEPIIKYIRDQHSSY 124
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 QFERFLRDESGLNR-RNIVDNRIHCCFYFISPFXHRVKPL 625
Q +LR E +R + + D R+HCC +FI P H ++P+
Sbjct: 120 QHSSYLRRELNSHREKRLQDTRVHCCLFFIRPTGHSLRPI 159
Score = 32.3 bits (70), Expect = 0.060
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Frame = +1
Query: 187 YVGFANLPNQVHRKSVKKGFEFTLW-----WSGKVDWANLLWS 300
YVGF ++ +Q++RK +++GF+F + SGK N L+S
Sbjct: 12 YVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFS 54
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 82.6 bits (195), Expect = 4e-17
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Frame = +3
Query: 228 ICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK-TNQTVKLDASTVEIE 404
I +K + +M+ G SG GK+T N+LF T L PE+ A E +T+++ + IE
Sbjct: 24 IKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLEVKKNKAVIE 83
Query: 405 ERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDF 524
E G + LTV+DTPG+GD IDNT C+ ++ +Y+D+ + +
Sbjct: 84 EDGFHINLTVLDTPGFGDFIDNTSCWNTVAEYLDEQHERY 123
Score = 31.9 bits (69), Expect = 0.080
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 509 QFERFLRDESGLNRRNIVDNRIHCCFYFISPFXHRVKPL 625
Q ER+L + R D R+H C YFI+P + PL
Sbjct: 119 QHERYLIHDQNSLRVPRKDTRVHVCLYFITPVSFGMLPL 157
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 68.1 bits (159), Expect = 1e-12
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Frame = +3
Query: 219 TQKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDL--YPERVIPDATEKTNQTVKLDAST 392
T+K KKG ++LMVVG+ GLG++ +N+L L + P + + T
Sbjct: 43 TKKSSKKGIPLNLMVVGDVGLGRTAFINTLCEKPLIRHNNNFDPAEASSVSPVEIVPYQT 102
Query: 393 VEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDFFE 530
I E G K+ LTV+DTP +G+AIDN + F I+QYI+ + E
Sbjct: 103 DIILEDGTKINLTVLDTPHFGEAIDNENNFDIILQYIESQYDNVLE 148
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 QFERFLRDESGLNRR-NIVDNRIHCCFYFISPFXHRVKPL 625
Q++ L +ES + R D+R+H YFISP H ++ L
Sbjct: 142 QYDNVLEEESRIKRNARFCDDRVHALIYFISPTGHGLREL 181
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 65.7 bits (153), Expect = 5e-12
Identities = 32/89 (35%), Positives = 51/89 (57%)
Frame = +3
Query: 225 KICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
++C+ G ++L+VVGES LGK+T VNS ++ D + +T+ +
Sbjct: 111 RVCRNGIDINLIVVGESSLGKTTFVNSFLQSN--------DTNFRPKKTMDFVEHKATLS 162
Query: 405 ERGVKLRLTVVDTPGYGDAIDNTDCFRSI 491
+ K LT+VDTPG+GD DN++C+R I
Sbjct: 163 DGDQKFNLTIVDTPGFGDKSDNSNCWRPI 191
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 491 NSIH*RQFERFLRDESGLNRRNI-VDNRIHCCFYFISPFXHRVKPL 625
N +H + + ++E ++R +D+RIH C +FI+P HR++PL
Sbjct: 194 NLLH--RLNAYFQNEVKMDRETSEIDSRIHGCLFFINPNGHRLQPL 237
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 44.4 bits (100), Expect = 1e-05
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 228 ICKKGFRVHLMVVGESGLGKSTLVNSLFLTD-LYPERVIPDATEKTNQTVKLDASTVEIE 404
+ KKG ++ +MV G S +NSL L E I ++ +++ +I
Sbjct: 12 LSKKGKKLRIMVAGSSYTSYQACINSLCSKQILEAETEIDPLKAHIDRILEIREFNADIL 71
Query: 405 ERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYID 506
E + LTV++ G+GD IDN+ F + Y++
Sbjct: 72 EDEFHVDLTVIEVNGFGDKIDNSASFEVVTHYLE 105
Score = 28.3 bits (60), Expect = 0.98
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 509 QFERFLRDESGLNRRN-IVDNRIHCCFYFISPFXH 610
QF++ L +ES + R + D R+ YFI+P H
Sbjct: 107 QFDQALIEESKIKRNSKFTDTRVDALLYFIAPRGH 141
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 33.1 bits (72), Expect = 0.035
Identities = 26/85 (30%), Positives = 39/85 (45%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+VVGE+G GK+T + D Y + T+ A V EE GV+L TV
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVS-EEMGVRLGSTV 569
Query: 435 VDTPGYGDAIDNTDCFRSIIQYIDD 509
GY ++ ++I+Y+ D
Sbjct: 570 ----GYSIRFEDVTGPDTVIKYMTD 590
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 30.3 bits (65), Expect = 0.24
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK--TNQTVKLDASTVEI 401
L+VVG+ G GK+ L+ +F + +PER +P E T+ T ++ +E+
Sbjct: 17 LVVVGDGGCGKTCLL-IVFSSGTFPERYVPTVFENYITDITYGPNSKVIEL 66
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +3
Query: 258 MVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
+++G +G GKST+V+++ + +P +++ A E + +K +T IE
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLGWPPKLLGRAKE-AREFIKYGKNTATIE 84
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 404
L+++G+SG+GKS L+ F D Y E I + +T +L+ TV+++
Sbjct: 11 LLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
+ + L+++G+SG+GKS L+ P + + +T++LD ++++
Sbjct: 8 YLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQ 61
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 28.7 bits (61), Expect = 0.74
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 228 ICKKGFRVHLMVVGESGLGKSTLVNSLFL--TDLYPERVIPDATEKTNQTVK 377
+C +G H+ VVGE+ GKSTL+ +L ++ E ++ T Q +K
Sbjct: 206 LCSRG---HVYVVGEANSGKSTLLKTLAKRGNGVFNELLLDSFLPGTTQAIK 254
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 0.98
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 214 QVHRKSVKKGFEFTLWWSGKVDWANLLWSTL 306
Q+H + + G EFT +W+G D AN + TL
Sbjct: 992 QMHWEKLNSGLEFT-FWTGPSDEANKILETL 1021
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.5 bits (58), Expect = 1.7
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 246 RVHLMVVGESGLGKSTLVNSLFLTDLYP-ERVIPDATEKTN-QTVKLDASTVEIEERGVK 419
R + +VG SG GKSTLV L T YP E + D TN T L ++++
Sbjct: 1128 REKVAIVGISGSGKSTLVELLRKT--YPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKPHL 1185
Query: 420 LRLTVVDTPGYG 455
L T++++ YG
Sbjct: 1186 LGSTILESLLYG 1197
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 512 FERFLRDESGLNRRNIVDNRIHCCFYFISPFXHRVKPLILS 634
F++ L+D G R +I+DN C S F + PL+LS
Sbjct: 1188 FQKLLKDAKGQLRIHIIDNMSRICLRETSLF---ISPLMLS 1225
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
++VVGE+G GKST + FL + + A + + ++ + E+G +L V
Sbjct: 115 IVVVGETGSGKSTQIPQ-FLNECPYAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQV 173
Query: 435 VDTPGYGDAIDNTDCFRSIIQYIDD 509
GY D+T ++ I+Y+ D
Sbjct: 174 ----GYSIRFDDTTSKKTRIKYLTD 194
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +3
Query: 234 KKGFRVHLMVVGESGLGKSTLVN 302
KK + ++++GESG+GK++++N
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMN 26
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 222 QKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDAT 353
Q++ + G + + +VG +GKSTL L T+L P AT
Sbjct: 37 QRLGRPGNHLKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFAT 80
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 246 RVHLMVVGESGLGKSTLVNSLF 311
R + +VG +G GKSTL +LF
Sbjct: 1253 REKIGIVGRTGAGKSTLAMALF 1274
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 228 ICKKGFRVHLMVVGESGLGKSTLV 299
I K+G HL++ G G+GK+T +
Sbjct: 48 IAKEGNMPHLVISGMPGIGKTTSI 71
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 617 LPGVXTVI*SRNSNEYDCPQCYDGLGRSRLEEIFRTVVNVL 495
+PG+ I RNS CP DG ++ RTV+++L
Sbjct: 300 IPGIIEFI--RNSWSDACPVVKDGSNSPSASKVCRTVLSML 338
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 261 VVGESGLGKSTLVNSL 308
++GESG GK+TL+N L
Sbjct: 916 LMGESGAGKTTLLNVL 931
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +2
Query: 44 FKLNLNIPNHCLFSHRNYRKFKLNIILKNC 133
+ +N + N +F H ++R F+L ++ C
Sbjct: 29 YNMNPELENPGMFKHVDWRDFRLEFVILAC 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,149
Number of Sequences: 5004
Number of extensions: 46509
Number of successful extensions: 244
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -