Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060716.seq
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 87 1e-17
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 64 6e-11
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 64 6e-11
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 64 6e-11
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 32 0.30
AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical ... 32 0.30
AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical ... 32 0.30
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 32 0.30
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 0.69
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 1.2
U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical pr... 30 1.6
U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical pr... 30 1.6
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 30 1.6
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 29 2.1
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 29 2.8
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 29 2.8
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 29 3.7
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 29 3.7
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 28 4.9
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 28 4.9
Z96048-3|CAB09418.1| 733|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 28 6.4
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 28 6.4
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 28 6.4
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 27 8.5
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 27 8.5
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 27 8.5
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 27 8.5
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 86.6 bits (205), Expect = 1e-17
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +3
Query: 222 QKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDA-TEKTNQTVKLDASTVE 398
++ K GF LMVVG SGLGKST +N+LFL ++ A T TV+++ V+
Sbjct: 39 RRAVKNGFDFTLMVVGRSGLGKSTFINTLFLAEINNLNEKESAPTHPHPSTVRVEEKLVK 98
Query: 399 IEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDFFE 530
+ E V L LT+VDTPG+GDA++N+ C+ I+ Y++ FFE
Sbjct: 99 LVENSVSLNLTLVDTPGFGDAVNNSKCWEPIVNYVESK---FFE 139
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 142 SNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFEFTLWWSGK 273
++E+ +T + E P Y GFAN PNQV R++VK GF+FTL G+
Sbjct: 12 NDESLRTGQHKENPNYWGFANFPNQVFRRAVKNGFDFTLMVVGR 55
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 485 IHNSIH*RQFERFLRDESGLNR-RNIVDNRIHCCFYFISPFXHRVKPL 625
I N + + FE+F +E+ ++R IVD +H C YFI P H +KP+
Sbjct: 129 IVNYVESKFFEQFC-EETRIDRGEKIVDKCVHLCLYFIEPSGHGLKPI 175
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/103 (33%), Positives = 61/103 (59%)
Frame = +3
Query: 222 QKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 401
+K + GF+ +LM VGE+G GK+TL+ SLF L E P E +TV+L T ++
Sbjct: 91 KKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDV 145
Query: 402 EERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDFFE 530
E G++++L +V+T G+GD +D + I+ Y++ + + +
Sbjct: 146 AEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQ 188
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 509 QFERFLRDESGLNR--RNIVDNRIHCCFYFISPFXHRVKPLIL 631
QFE +L++E R + D+RIH C YFISP H +K L L
Sbjct: 182 QFETYLQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDL 224
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +1
Query: 172 LETPGYVGFANLPNQVHRKSVKKGFEFTLWWSGK 273
++ G+VGF +LP+Q+ +K+V+ GF+F L G+
Sbjct: 74 MQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGE 107
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/103 (33%), Positives = 61/103 (59%)
Frame = +3
Query: 222 QKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 401
+K + GF+ +LM VGE+G GK+TL+ SLF L E P E +TV+L T ++
Sbjct: 91 KKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDV 145
Query: 402 EERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDFFE 530
E G++++L +V+T G+GD +D + I+ Y++ + + +
Sbjct: 146 AEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQ 188
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 509 QFERFLRDESGLNR--RNIVDNRIHCCFYFISPFXHRVKPLIL 631
QFE +L++E R + D+RIH C YFISP H +K L L
Sbjct: 182 QFETYLQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDL 224
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +1
Query: 172 LETPGYVGFANLPNQVHRKSVKKGFEFTLWWSGK 273
++ G+VGF +LP+Q+ +K+V+ GF+F L G+
Sbjct: 74 MQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGE 107
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/103 (33%), Positives = 61/103 (59%)
Frame = +3
Query: 222 QKICKKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 401
+K + GF+ +LM VGE+G GK+TL+ SLF L E P E +TV+L T ++
Sbjct: 160 KKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDV 214
Query: 402 EERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDDSSKDFFE 530
E G++++L +V+T G+GD +D + I+ Y++ + + +
Sbjct: 215 AEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQ 257
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 509 QFERFLRDESGLNR--RNIVDNRIHCCFYFISPFXHRVKPLIL 631
QFE +L++E R + D+RIH C YFISP H +K L L
Sbjct: 251 QFETYLQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDL 293
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +1
Query: 172 LETPGYVGFANLPNQVHRKSVKKGFEFTLWWSGK 273
++ G+VGF +LP+Q+ +K+V+ GF+F L G+
Sbjct: 143 MQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGE 176
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 404
L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 14 LLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.3 protein.
Length = 271
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 56 LNIPNHCLFSHRNYRKFKLNIILKNC*KCQMKQI 157
L++P F R+Y F+ N+I +NC C+ + I
Sbjct: 83 LSLPKAATFESRSYEYFRTNLIRRNCETCKSRTI 116
>AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.2 protein.
Length = 271
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 56 LNIPNHCLFSHRNYRKFKLNIILKNC*KCQMKQI 157
L++P F R+Y F+ N+I +NC C+ + I
Sbjct: 83 LSLPKAATFESRSYEYFRTNLIRRNCETCKSRTI 116
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 404
L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 14 LLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 234 KKGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST--VEIEE 407
+K + ++++G+SG+GK++L+N + DL + V + T+ D T V I++
Sbjct: 5 RKKALLKVIILGDSGVGKTSLMNQYEIGDLMNQYVNRRFMNQYKATIGADFLTRDVNIDD 64
Query: 408 RGVKLR 425
R V L+
Sbjct: 65 RTVTLQ 70
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 249 VHLMVVGESGLGKSTLVNSL--FLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKL 422
V L + G GK +L N + F T + PERV PD E N K+ +T + R V L
Sbjct: 172 VVLRIYGARNCGKKSLANRIHHFATSMAPERVDPD--ENGNDYTKM--TTFLLNGREVTL 227
Query: 423 RLTVVDT 443
+ + T
Sbjct: 228 EILLEST 234
>U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical
protein C18B2.5b protein.
Length = 699
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGVK 419
L++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 469 LLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVLP 524
Query: 420 LRLTVVDTPGYGDAIDNTDCFRSIIQYID 506
+TVVDTPG D + N R I Q+ +
Sbjct: 525 YNVTVVDTPGVEDKMGNKTVSRLIKQWFE 553
>U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical
protein C18B2.5a protein.
Length = 673
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGVK 419
L++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 443 LLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVLP 498
Query: 420 LRLTVVDTPGYGDAIDNTDCFRSIIQYID 506
+TVVDTPG D + N R I Q+ +
Sbjct: 499 YNVTVVDTPGVEDKMGNKTVSRLIKQWFE 527
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +3
Query: 258 MVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVV 437
MVVG +GKS+L+N++ L +R +A + TV++ + V I + K + ++
Sbjct: 119 MVVGIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQ-NRVRILD---KPPVYII 174
Query: 438 DTPG 449
DTPG
Sbjct: 175 DTPG 178
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
+++VGE+G GK+T + L D + + + T+ + + + +E GV L V
Sbjct: 460 VIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQ-PRRVAAMSVARRVADEMGVDLGQDV 518
Query: 435 VDTPGYGDAIDNTDCFRSIIQYIDD 509
GY ++ ++II+Y+ D
Sbjct: 519 ----GYAIRFEDCTSEKTIIKYMTD 539
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
+++VGE+G GK+T + L D + + + T+ + + + +E GV L V
Sbjct: 460 VIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQ-PRRVAAMSVARRVADEMGVDLGQDV 518
Query: 435 VDTPGYGDAIDNTDCFRSIIQYIDD 509
GY ++ ++II+Y+ D
Sbjct: 519 ----GYAIRFEDCTSEKTIIKYMTD 539
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLRLT 431
L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++L
Sbjct: 12 LLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQ 61
Query: 432 VVDTPG 449
+ DT G
Sbjct: 62 IWDTAG 67
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLRLT 431
L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++L
Sbjct: 12 LLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQ 61
Query: 432 VVDTPG 449
+ DT G
Sbjct: 62 IWDTAG 67
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 402 EERGVKLRLT-VVDTPGYGDAIDNTDCFRSIIQYIDDS-SKDFFETRA 539
E+R V + + PG+ +AID D R ++ ++ KD + RA
Sbjct: 183 EQREVAKEIADAISNPGFNNAIDEADLLRELVDLEQEALDKDLLDARA 230
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLY-PERVIPDATEKTNQTVKLDASTVEI 401
++++GESG+GKS+L+ F+ D++ PE+ + ++ +D + V++
Sbjct: 14 ILIIGESGVGKSSLM-LRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKL 62
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical
protein C11H1.4a protein.
Length = 996
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 213 SGTQKICKKGFRVHLMVVGESGLGKSTLVNSL 308
S K+C G + H+MV+G +G GK+T + L
Sbjct: 491 SELDKVCCGG-KQHVMVLGGNGSGKTTFIKKL 521
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 213 SGTQKICKKGFRVHLMVVGESGLGKSTLVNSL 308
S K+C G + H+MV+G +G GK+T + L
Sbjct: 491 SELDKVCCGG-KQHVMVLGGNGSGKTTFIKKL 521
>Z96048-3|CAB09418.1| 733|Caenorhabditis elegans Hypothetical
protein F57A10.3 protein.
Length = 733
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Frame = +3
Query: 261 VVGESGLGKSTLVNSLF-LTDLYPERVIPDATE-KTNQTVKLDASTVEIEERGVKLRLTV 434
VVG SG GKST+ + L L D R++ D T+ K + + V T+
Sbjct: 513 VVGSSGSGKSTIASLLLRLYDPTSGRILVDGTDLKDIDPSYWRRHIGTVGQEPVLFSTTI 572
Query: 435 VDTPGYGDAIDNTDCFRSIIQYIDDSSKDFFETR 536
+ YG I+ D S+ D F +R
Sbjct: 573 KENIIYGSLEPENVTDAEIVSAADQSNADEFISR 606
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
L+++GES +GKS+LV + + QTV LD +T++ E
Sbjct: 22 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFE 71
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/50 (22%), Positives = 28/50 (56%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
++++G+SG+GKS L++ + + E E +++ ++ TV+ +
Sbjct: 14 VVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATRSISVEGKTVKAQ 63
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYP 329
+ +VGE+G GK+TL+ L L DL P
Sbjct: 526 ICIVGENGAGKTTLL-KLLLDDLQP 549
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+SG+GKS+L+ F + + E I T+ +D ++ G +++L +
Sbjct: 13 LLIIGDSGVGKSSLL-LRFADNTFSENYI--------TTIGVDFKIRTMDINGQRVKLQI 63
Query: 435 VDTPG 449
DT G
Sbjct: 64 WDTAG 68
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+SG+GK T V F D + I T+ +D IE G K++L +
Sbjct: 11 LLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKLQI 61
Query: 435 VDTPG 449
DT G
Sbjct: 62 WDTAG 66
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
+ VVG++G GKS+L++ L +T Y + D + TV + VE +
Sbjct: 240 IYVVGDTGTGKSSLISQL-ITSEY-KNAFADEIQDYENTVSICIGGVECD 287
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+SG+GK T V F D + I T+ +D IE G K++L +
Sbjct: 11 LLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKLQI 61
Query: 435 VDTPG 449
DT G
Sbjct: 62 WDTAG 66
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+SG+GK T V F D + I T+ +D IE G K++L +
Sbjct: 11 LLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKLQI 61
Query: 435 VDTPG 449
DT G
Sbjct: 62 WDTAG 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,665
Number of Sequences: 27780
Number of extensions: 251183
Number of successful extensions: 865
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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