Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060716.seq
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16620.1 68416.m02124 chloroplast outer membrane protein, put... 39 0.003
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put... 36 0.017
At3g09910.1 68416.m01181 Ras-related GTP-binding protein, putati... 35 0.052
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put... 33 0.21
At4g15810.1 68417.m02406 chloroplast outer membrane protein, put... 32 0.28
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 32 0.28
At1g33890.1 68414.m04201 avirulence-responsive protein, putative... 32 0.28
At5g03530.1 68418.m00309 Ras-related GTP-binding family protein ... 31 0.48
At1g03160.1 68414.m00293 GTP-binding protein-related contains TI... 31 0.64
At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small GTP... 31 0.64
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 31 0.85
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 31 0.85
At3g54840.1 68416.m06076 Rab GTPase (ARA6) identical to small GT... 31 0.85
At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putati... 30 1.5
At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putati... 30 1.5
At2g07680.1 68415.m00992 ABC transporter family protein 30 1.5
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 2.0
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 29 2.6
At2g38840.1 68415.m04772 guanylate-binding family protein simila... 29 2.6
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter... 29 2.6
At2g22870.1 68415.m02715 expressed protein 29 3.4
At1g33900.1 68414.m04202 avirulence-responsive protein, putative... 29 3.4
At1g16920.1 68414.m02051 Ras-related GTP-binding protein, putati... 29 3.4
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR... 28 4.5
At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putati... 28 4.5
At3g11730.1 68416.m01439 Ras-related GTP-binding protein, putati... 28 4.5
At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putati... 28 4.5
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 28 4.5
At1g27510.1 68414.m03353 expressed protein 28 4.5
At5g65960.1 68418.m08303 expressed protein 28 6.0
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 28 6.0
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi... 28 6.0
At3g21250.1 68416.m02685 ABC transporter family protein similar ... 28 6.0
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 28 6.0
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter... 28 6.0
At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)... 28 6.0
At5g27740.1 68418.m03327 expressed protein 27 7.9
At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR... 27 7.9
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR... 27 7.9
At3g55720.1 68416.m06190 expressed protein contains Pfam profile... 27 7.9
At3g05310.1 68416.m00579 GTP-binding protein-related low similar... 27 7.9
At1g33960.1 68414.m04209 avirulence-responsive protein / avirule... 27 7.9
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 27 7.9
>At3g16620.1 68416.m02124 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1089
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKL 422
F +MV+G+SG+GKS +NS+F +L ++ DA + + V+ +E +G+K+
Sbjct: 455 FSCTIMVLGKSGVGKSATINSIF-DEL---KISTDAFQVGTKKVQ----DIEGFVQGIKV 506
Query: 423 RLTVVDTPG----YGDAIDNTDCFRSIIQYIDDSSKD 521
R V+DTPG + D N +S+ +I S D
Sbjct: 507 R--VIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPD 541
>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1206
Score = 36.3 bits (80), Expect = 0.017
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKL 422
F +MV+G+SG+GKS +NS+F + DA + + V+ VE +G+K+
Sbjct: 573 FSCTIMVLGKSGVGKSATINSIF----DEVKFCTDAFQMGTKRVQ----DVEGLVQGIKV 624
Query: 423 RLTVVDTPG----YGDAIDNTDCFRSIIQYIDDSSKD 521
R V+DTPG + D N S+ +I + D
Sbjct: 625 R--VIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPD 659
>At3g09910.1 68416.m01181 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:2723477 from
[Arabidopsis thaliana] ;contains Pfam profile: PF00071
Ras family
Length = 205
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
++++G+SG+GKS+L+ S I + E T+ +D +++ RG +L+LT+
Sbjct: 16 ILLIGDSGVGKSSLLLSF----------ISSSVEDLAPTIGVDFKIKQMKVRGKRLKLTI 65
Query: 435 VDTPG 449
DT G
Sbjct: 66 WDTAG 70
>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 793
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKL 422
F + ++V+G++G+GKS +NS+F T++ + + TV GVK
Sbjct: 165 FSLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVM----GTVS----GVK- 215
Query: 423 RLTVVDTPGY 452
+T +DTPG+
Sbjct: 216 -VTFIDTPGF 224
>At4g15810.1 68417.m02406 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 898
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLF 311
F ++++V+G++G+GKS VNS+F
Sbjct: 608 FSINVLVIGKTGVGKSATVNSIF 630
>At4g02510.1 68417.m00343 chloroplast outer membrane protein, putative
similar to chloroplast protein import component Toc159
[Pisum sativum] GI:8489806, chloroplast outer envelope
protein 86 [Pisum sativum] GI:599958, GTP-binding protein
[Pisum sativum] GI:576509
Length = 1503
Score = 32.3 bits (70), Expect = 0.28
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKL 422
F ++++V+G++G+GKS +NS+ L + DA + +V+ + TV GVK
Sbjct: 854 FSLNILVLGKAGVGKSATINSI----LGNQIASIDAFGLSTTSVREISGTV----NGVK- 904
Query: 423 RLTVVDTPGYGDA 461
+T +DTPG A
Sbjct: 905 -ITFIDTPGLKSA 916
>At1g33890.1 68414.m04201 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 334
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +3
Query: 252 HLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLT 431
++++VG +G GKS NSL D++ KT QT K + G R+
Sbjct: 15 NIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYK------AVTPGG--SRIN 66
Query: 432 VVDTPGYGD 458
V+DTPG D
Sbjct: 67 VIDTPGLFD 75
>At5g03530.1 68418.m00309 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 210
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
++++G+SG+GKS+L+ S I + E T+ +D ++ G +L+LT+
Sbjct: 16 ILLIGDSGVGKSSLLVSF----------ISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTI 65
Query: 435 VDTPG 449
DT G
Sbjct: 66 WDTAG 70
>At1g03160.1 68414.m00293 GTP-binding protein-related contains
TIGRFAM TIGR00650: GTP-binding conserved hypothetical
protein domain; contains TIGRFAM TIGR00231: small
GTP-binding protein domain; similar to mitofusin 1
precursor (GI:12744896) [Homo sapiens]
Length = 642
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEER 410
+++VGE GKST++N+L E V+P TN+ L S +E EE+
Sbjct: 352 MVIVGEFNSGKSTVINALLGKRYLKEGVVP----TTNEITFLCYSDLESEEQ 399
>At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small
GTP-binding protein, putative identical to Ras-related
protein ARA-5 SP:P28188 from [Arabidopsis thaliana]
Length = 203
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+SG+GKS L+ F D Y E I T+ +D +E+ G ++L +
Sbjct: 11 LLLIGDSGVGKSCLL-LRFSDDSYVESYI--------STIGVDFKIRTVEQDGKTIKLQI 61
Query: 435 VDTPG 449
DT G
Sbjct: 62 WDTAG 66
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 30.7 bits (66), Expect = 0.85
Identities = 19/96 (19%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +3
Query: 261 VVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL-TVV 437
VVG +G GKS +++++ ++ +R K ++ + + ++ GV ++ ++
Sbjct: 53 VVGPNGSGKSNVIDAMLF--VFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVQFEEII 110
Query: 438 DTP-GYGDAIDNTDCFRSIIQYIDDSSKDFFETRAA 542
D G + + +D + + + D+SSK + R++
Sbjct: 111 DLENGLYETVPGSDFMITRVAFRDNSSKYYINERSS 146
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 30.7 bits (66), Expect = 0.85
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L++VGE+G GK+T + Y +R T+ AS V +E GVKL V
Sbjct: 241 LVIVGETGSGKTTQIPQYLQEAGYTKRGKIGCTQPRRVAAMSVASRV-AQEVGVKLGHEV 299
Query: 435 VDTPGYGDAIDNTDCFRSIIQYIDD 509
GY ++ +++I+Y+ D
Sbjct: 300 ----GYSIRFEDCTSEKTVIKYMTD 320
>At3g54840.1 68416.m06076 Rab GTPase (ARA6) identical to small
GTPase Ara6 [Arabidopsis thaliana] GI:13160603
Length = 202
Score = 30.7 bits (66), Expect = 0.85
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 237 KGFRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKL-DASTVEIE 404
K RV L+++G+SG+GKS +V + +QT+ L D++TV+ E
Sbjct: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFE 86
>At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303750 from [Pisum
sativum]
Length = 202
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+SG+GKS L+ F D Y + I T+ +D +E+ G ++L +
Sbjct: 11 LLLIGDSGVGKSCLL-LRFADDSYLDSYI--------STIGVDFKIRTVEQDGKTIKLQI 61
Query: 435 VDTPG 449
DT G
Sbjct: 62 WDTAG 66
>At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putative
very strong similarity to RAB1C [Lotus corniculatus var.
japonicus] GI:1370166; contains Pfam profile PF00071:
Ras family
Length = 202
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+SG+GKS L+ F D Y + I T+ +D +E+ G ++L +
Sbjct: 11 LLLIGDSGVGKSCLL-LRFADDSYLDSYI--------STIGVDFKIRTVEQDGKTIKLQI 61
Query: 435 VDTPG 449
DT G
Sbjct: 62 WDTAG 66
>At2g07680.1 68415.m00992 ABC transporter family protein
Length = 1194
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 249 VHLMVVGESGLGKSTLVNSLF-LTDLYPERVIPD 347
+H+ V+G +G GKS+++N+LF LT + ++ D
Sbjct: 986 MHVGVIGRTGAGKSSILNALFRLTPVCSGEILVD 1019
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 228 ICKKGFRVHLMVVGESGLGKSTLVNSLFL 314
+CK G R++L V+G +G GKS+LV ++ L
Sbjct: 38 VCKPGSRLNL-VIGPNGSGKSSLVCAIAL 65
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 249 VHLMVVGESGLGKSTLVNSLFLTDLYPERVIP 344
V ++VVG+ G GKS+L+ + TD +P V P
Sbjct: 18 VRIVVVGDKGTGKSSLIVAA-ATDSFPPNVPP 48
>At2g38840.1 68415.m04772 guanylate-binding family protein similar
to SP|Q01514 Interferon-induced guanylate-binding
protein 1 (Guanine nucleotide-binding protein 1)
(Interferon-gamma inducible protein MAG-1) {Mus
musculus}; contains Pfam profile PF02263:
Guanylate-binding protein, N-terminal domain
Length = 679
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 261 VVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVD 440
V+G GKS L+N L Y + + + + + + +E+E GVK + +D
Sbjct: 65 VIGPYRSGKSFLLNQLLSLSCYEGFGVGHMRDTKTKGIWVWGTPLELEIDGVKTSVIYLD 124
Query: 441 TPGY 452
T G+
Sbjct: 125 TEGF 128
>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
(MRP1) identical to glutathione S-conjugate transporting
ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
Length = 1622
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 261 VVGESGLGKSTLVNSLF-LTDLYPERVIPD 347
+VG +G GKS+L+N+LF + +L R++ D
Sbjct: 1269 IVGRTGAGKSSLLNALFRIVELEKGRILID 1298
>At2g22870.1 68415.m02715 expressed protein
Length = 300
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 213 SGTQKICKKGFRVHLMVVGESGLGKSTLVNSL 308
S + C K R + ++G S +GKS+L+N L
Sbjct: 109 SARARDCPKDDRPEIAILGRSNVGKSSLINCL 140
>At1g33900.1 68414.m04202 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 326
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 252 HLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLT 431
++++VG +G GKS NSL ++V T T T+K + + V + G +
Sbjct: 21 NIVLVGRTGNGKSATGNSLI-----GKQVFRSETRATGVTMKCE-TCVAVTPCGT--GIN 72
Query: 432 VVDTPGYGD 458
V+DTPG D
Sbjct: 73 VIDTPGLFD 81
>At1g16920.1 68414.m02051 Ras-related GTP-binding protein, putative
similar to GTP binding protein GI:218228 from [Vicia
faba]; identical to cDNA small GTP-binding protein
(Rab11) GI:451859
Length = 216
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
++++G+SG+GKS L++ + E E +T+K+D V+ +
Sbjct: 16 VVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQ 65
>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1165
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 237 KGFRVHLMVVGESGLGKSTLVNSLFLT 317
KG RV + VVG G+GK+TLV L+ T
Sbjct: 227 KGTRV-IGVVGMPGIGKTTLVKELYKT 252
>At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871508 from [Pisum
sativum]
Length = 216
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKL 422
+ + L+++G+SG+GKS L+ F D + I T+ +D +E G ++
Sbjct: 14 YLIKLLLIGDSGVGKSCLL-LRFSDDTFTTSFI--------TTIGIDFKIRTVELDGKRI 64
Query: 423 RLTVVDTPG 449
+L + DT G
Sbjct: 65 KLQIWDTAG 73
>At3g11730.1 68416.m01439 Ras-related GTP-binding protein, putative
similar to Rab1-like small GTP-binding protein
GI:4096662 from [Petunia x hybrida]
Length = 205
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L+++G+S +GKS L+ F D Y + I T+ +D IE+ G ++L +
Sbjct: 11 LLLIGDSSVGKSCLL-LRFADDAYIDSYI--------STIGVDFKIRTIEQDGKTIKLQI 61
Query: 435 VDTPG 449
DT G
Sbjct: 62 WDTAG 66
>At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871510 from [Pisum
sativum]; contains Pfam profile: PF00071 Ras family
Length = 218
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 243 FRVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKL 422
+ + L+++G+SG+GKS L+ F D + I T+ +D +E G ++
Sbjct: 14 YLIKLLLIGDSGVGKSCLL-LRFSDDTFTTSFI--------TTIGIDFKIRTVELDGKRI 64
Query: 423 RLTVVDTPG 449
+L + DT G
Sbjct: 65 KLQIWDTAG 73
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 434
L++VG++G GK+T + Y +R T+ A+ V +E GVKL V
Sbjct: 423 LVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARV-AQEMGVKLGHEV 481
Query: 435 VDTPGYGDAIDNTDCFRSIIQYIDD 509
GY ++ +++++Y+ D
Sbjct: 482 ----GYSIRFEDCTSDKTVLKYMTD 502
>At1g27510.1 68414.m03353 expressed protein
Length = 651
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 330 ERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDD 509
E ++ + TE+TN + D VE EE ++ +D+ YG + ++ I+D
Sbjct: 333 EELVGEGTEETNSSD--DEEEVEEEENDSIEAISSMDSADYGKHSNTKLVIGGVLHNIED 390
Query: 510 SSKD 521
SS D
Sbjct: 391 SSID 394
>At5g65960.1 68418.m08303 expressed protein
Length = 393
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 246 RVHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 401
R ++VVG SG+GK TL++ L + TE T+ T ++
Sbjct: 4 RPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESSSQTEVHGWTINTKYYTADV 55
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 27.9 bits (59), Expect = 6.0
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 249 VHLMVVGESGLGKSTLVNSLFLTDLYPERVI--PDATEKTNQTVKLDASTVEIEERGVKL 422
+ L +VG+ +GKSTL+N+L L ERV+ P+A + DA V+ E +G +
Sbjct: 313 LQLAIVGKPNVGKSTLLNAL----LEEERVLVGPEA------GLTRDAVRVQFEFQGRTV 362
Query: 423 RLTVVDTPGY 452
L VDT G+
Sbjct: 363 YL--VDTAGW 370
>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 990
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 175 ETPGYVGFANLPNQVHRKSVKKGFEFTLWWSGKV 276
+T G++ N QVH ++K G++ LW S +
Sbjct: 525 KTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGI 558
>At3g21250.1 68416.m02685 ABC transporter family protein similar to
MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
thaliana]
Length = 1294
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 234 KKGFRVHLMVVGESGLGKSTLVNSLF 311
++G RV VVG +G GKSTL+++LF
Sbjct: 1070 REGTRVG--VVGRTGSGKSTLISALF 1093
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 249 VHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTV 374
+H+++VG+ GLGKS L+ + V +AT + TV
Sbjct: 397 IHVIIVGDPGLGKSQLLQAAAAISPRGIYVCGNATTRAGLTV 438
>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
(MRP2) almost identical to MgATP-energized glutathione
S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
Length = 1623
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 261 VVGESGLGKSTLVNSLF-LTDLYPERVIPD 347
+VG +G GKS+L+N+LF + ++ R++ D
Sbjct: 1274 IVGRTGAGKSSLLNALFRIVEVEKGRILID 1303
>At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)
identical to Ras-related protein ARA-2 SP:P28185 from
[Arabidopsis thaliana]
Length = 216
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 255 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 404
L+++G+SG+GKS L++ + E E +T K++ V+ +
Sbjct: 16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQ 65
>At5g27740.1 68418.m03327 expressed protein
Length = 354
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 252 HLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAS--TVEIE 404
HL+ G SG GK TL+ +L L +Y + + N+ K+DA T+++E
Sbjct: 36 HLLFYGPSGSGKKTLIMAL-LKQIYGASA--EKVKVENRAWKVDAGSRTIDLE 85
>At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1041
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 225 KIC--KKGFRVHLMVVGESGLGKSTLVNSLF 311
K+C K R+ + + G+SG+GKST+ +LF
Sbjct: 200 KLCLESKEARIMVGIWGQSGIGKSTIGRALF 230
>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1103
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 225 KIC--KKGFRVHLMVVGESGLGKSTLVNSLF 311
K+C K R+ + + G+SG+GKST+ +LF
Sbjct: 193 KLCLESKEARIMVGIWGQSGIGKSTIGRALF 223
>At3g55720.1 68416.m06190 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 438
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 124 KKLLKMSNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFEFTLWWSGKVDWANLLW 297
KK++++ N N + E G+V + +Q + V G + + G VDW W
Sbjct: 155 KKMVRIRNVNNNNGNGGEMGGFVLWKKGSSQWSLELVVSGCKVSAGCDGNVDWRQSPW 212
>At3g05310.1 68416.m00579 GTP-binding protein-related low similarity
to rac 1 protein [Physcomitrella patens] GI:7243743;
contains Pfam profile PF00036: EF hand (domain)
Length = 648
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 249 VHLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTN 365
+ ++VVGE G GKS+L+ + +P IP TN
Sbjct: 15 IRIVVVGEKGSGKSSLIMAAARNTFHPN--IPSLLPYTN 51
>At1g33960.1 68414.m04209 avirulence-responsive protein / avirulence
induced gene (AIG1) identical to AIG1 (exhibits RPS2-
and avrRpt2-dependent induction early after infection
with Pseudomonas) SP:U40856 [Arabidopsis thaliana]
(Plant Cell 8 (2), 241-249 (1996))
Length = 353
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 252 HLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLT 431
++++VG +G GKS NS+ + +V T+ + T++ A E + L
Sbjct: 44 NIVLVGRTGNGKSATGNSIVRS-----KVFKSKTKSSGVTMECHAVKAVTPEGPI---LN 95
Query: 432 VVDTPGYGD 458
V+DTPG D
Sbjct: 96 VIDTPGLFD 104
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1488
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 261 VVGESGLGKSTLVNSLF-LTDLYPERVIPD 347
VVG +G GKS+++N+L+ + +L R++ D
Sbjct: 1267 VVGRTGAGKSSMLNALYRIVELEKGRILID 1296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,846
Number of Sequences: 28952
Number of extensions: 233660
Number of successful extensions: 990
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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