Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060715.seq
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    28   1.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.7  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   2.3  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.0  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   7.0  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   9.3  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.3  

>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 372 LARNLNCSGFSFLTSCCITFLYNLI 298
           LA  ++C+ +SF  SC + F+ N I
Sbjct: 388 LADTVSCAAYSFAVSCALLFVMNYI 412


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 440 VKNAILSDEIYCPPETSVLLASYRSKPDTENTIPLCTGRD 559
           VKN  + + +Y P     +  +YR  PD+      C+GRD
Sbjct: 478 VKNEPVDERVYLPETFECISLTYRKLPDSWKQ-DKCSGRD 516


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -2

Query: 232 VFTT*SKSCFPVVVCWIANSSSASIVVTRTFICFPPATILIVMITHT 92
           V  T S SC P  V  +  S S S        C PP TILIV +  T
Sbjct: 162 VADTTSTSCNPATVLIVTTSGSTSTS------CPPPTTILIVTVPTT 202


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 510 RYEASNTEVSGGQYISSDKIAF 445
           R  ASNT V+G   +S DKI F
Sbjct: 106 RKTASNTSVAGSDSVSRDKIPF 127


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 179 ELEFRVHRRHADVHLFSSGNHFDSYDHT-HTADKITSTLCIIF 54
           E++ +V+   ADVH     NHF ++D + H        LC+ F
Sbjct: 263 EIQAKVNDASADVHEPFVYNHFRNFDASMHVNSTGLEDLCLTF 305


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -1

Query: 260 RRPHLAEADRLHNLIEELLPGGRLLDRELEFRVHRRHADVHLFSSGNHFDSYDHTHTAD 84
           ++P+L E+   H +     PGGR L  +   ++  + A     + G+  D  + T+  D
Sbjct: 41  KKPYLHESRHKHAMRRPRGPGGRFLTADKVSKLRAQEAAEAAANGGSTGDDVNATNAND 99


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 63  TQSACDLIRCVCVII 107
           T   CD++RC+C+I+
Sbjct: 229 TTICCDIMRCLCLIV 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,822
Number of Sequences: 5004
Number of extensions: 55094
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)