Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060715.seq
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 30 1.4
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 30 1.4
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 3.1
11_01_0665 - 5413561-5413593,5413785-5413907,5414020-5414259,541... 29 4.1
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 5.5
04_03_1035 - 21887562-21890030 28 5.5
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568... 28 5.5
11_01_0667 + 5436764-5437384,5437684-5437923,5438037-5438159,543... 28 7.2
12_02_0189 + 15165485-15168694 27 9.6
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873... 27 9.6
06_01_0499 - 3581145-3582425 27 9.6
03_02_0772 - 11051657-11052919 27 9.6
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 200 GGRLLDR-ELEFRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCII 57
GG LDR E E ++H R H + H + H H D S++ I+
Sbjct: 2801 GGYDLDRIESEVQLHERKETGHCHAGEEHGHQHHHGHVHDSAVSSVSIV 2849
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 422 KLFYLQVKNAILSDEIYCPPETSVLLASYRSKPDT 526
K Y+ K +L I C P LASY SKP T
Sbjct: 56 KAQYILRKQGLLGLSILCHPTRGASLASYESKPQT 90
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.1 bits (62), Expect = 3.1
Identities = 28/99 (28%), Positives = 45/99 (45%)
Frame = +3
Query: 153 TTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWSSVFSTPTPRATSLGSSCIRR*CNKT 332
T + ++ E Q TTG + +V K + + S+ S+ + LGS R+ CN+
Sbjct: 544 TQVSSKEESKAQHLTTG---YSEVNKQLVAKAPGSTTVSSAEKSSGILGSGAQRKRCNEA 600
Query: 333 SRKRIHCSSNSEPNSILRMSPMSSYRRSH*NSSIYR*KT 449
CS + S+ + PMS R+ +SS R KT
Sbjct: 601 GHSTQFCS--VDKLSLSAVKPMS--ERNMKDSSAKRNKT 635
>11_01_0665 -
5413561-5413593,5413785-5413907,5414020-5414259,
5414564-5415184
Length = 338
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -3
Query: 615 GHLVLVGHSLRK*TVIGQESRPVQSGIVFSVSGLDRYEASNTEVSGGQYISSDKIAFFT 439
G L+L + R + +R ++ G++ G+ + + ++ E GG+ I D I F T
Sbjct: 259 GPLLLKSQTGRSAVIDVGTARLIKGGVIKVFQGISKIKTNSIEFHGGKQIPFDAIVFAT 317
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 469 ILPSGDLGVAGFVPVQARHGEHNPALHGPG 558
++PS LG+ GFVP G H+ +H G
Sbjct: 350 VVPSSLLGIGGFVPSAQIAGMHSYMMHPQG 379
>04_03_1035 - 21887562-21890030
Length = 822
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -1
Query: 638 CSAPHSSRDILCWSVTL*GSKRSLARN--PGPCRAGLCSPCLAWTGT 504
C S + CW + G R + PGPC C W+G+
Sbjct: 298 CGVLMSDYSLQCWGAGVAGGVRKVFDKVLPGPCAPSKSCSCGVWSGS 344
>03_02_0110 -
5678057-5678794,5679279-5679470,5679971-5680087,
5680331-5680402,5680444-5680569,5681086-5681445,
5681944-5682057,5682158-5682199
Length = 586
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = -3
Query: 567 GQESRPVQSGIVFSVSGLDRYEASNTEVS 481
G P QSGI FS S D YEAS E S
Sbjct: 520 GAIPHPAQSGIKFSRSTSDGYEASGGEDS 548
>11_01_0667 +
5436764-5437384,5437684-5437923,5438037-5438159,
5438301-5438480
Length = 387
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -3
Query: 615 GHLVLVGHSLRK*TVIGQESRPVQSGIVFSVSGLDRYEASNTEVSGGQYISSDKIAFFT 439
G L+L + R + +R ++ G++ G+ + ++ E GG+ S D I F T
Sbjct: 259 GPLLLKSQTGRSAVIDVGTARLIKGGVIKVFQGISKINTNSVEFHGGRQNSFDAIVFAT 317
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 263 LQYTDSKGDLTWIKLYKKVMQQDVKKEN 346
L+Y +SK +L+W K+ K+VM EN
Sbjct: 918 LKYYESKLNLSWRKVLKEVMNNKESDEN 945
>07_01_1021 +
8736032-8736106,8736336-8736374,8737362-8737493,
8737848-8737892,8738450-8739157,8740679-8740807,
8741290-8741346,8742937-8742954
Length = 400
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 525 VSGLDRYEASNTEVSGGQYISSDKIAFFTCR*K 427
V G DR+E TEV GG + K FT R K
Sbjct: 356 VGGFDRWEGPLTEVGGGFWALFTKDGHFTKRAK 388
>06_01_0499 - 3581145-3582425
Length = 426
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -1
Query: 575 RSLARNPGPCRAGLCSPCLA----WTGTKPATP 489
R +A +P P RAG SPC+ W T TP
Sbjct: 235 RPVADSPCPVRAGAASPCILGAIYWITTAAPTP 267
>03_02_0772 - 11051657-11052919
Length = 420
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 566 ARNPGPCRAGLCSPCLAWTGTKPATPRSPEGSIFHRIKSRFSP 438
ARN G G S W +PRS +G+I R+ S P
Sbjct: 240 ARNGGDAANGGASSLAIWKQPPVPSPRSSDGAIKGRMTSMIPP 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,609,459
Number of Sequences: 37544
Number of extensions: 401701
Number of successful extensions: 1179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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