Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060715.seq
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45073| Best HMM Match : ERM (HMM E-Value=0) 109 1e-24
SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09) 108 4e-24
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 56 3e-08
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16) 42 6e-04
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 38 0.009
SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 31 0.60
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2) 31 1.1
SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 30 1.8
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 28 5.6
SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09) 28 7.4
SB_55615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_54| Best HMM Match : Actin (HMM E-Value=0) 27 9.8
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 27 9.8
SB_37101| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
Length = 504
Score = 109 bits (263), Expect = 1e-24
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +2
Query: 311 KKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETS 490
K VM QDVKKE PLQFKFR KF+PEDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+
Sbjct: 3 KAVMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETT 62
Query: 491 VLLASY 508
VLLASY
Sbjct: 63 VLLASY 68
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 514 QARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREEW 627
QA+HGE+ + +++LLP RV DQH +S+E+W
Sbjct: 71 QAKHGEYTD--ESAALIKDEKLLPDRVLDQHTLSKEQW 106
>SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)
Length = 118
Score = 108 bits (259), Expect = 4e-24
Identities = 46/64 (71%), Positives = 57/64 (89%)
Frame = +2
Query: 317 VMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVL 496
VM QDVKKE PLQFKFR KF+PEDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+VL
Sbjct: 1 VMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETTVL 60
Query: 497 LASY 508
LASY
Sbjct: 61 LASY 64
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 514 QARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREEW 627
QA+HGE+ + +++LLP RV DQH +S+E+W
Sbjct: 67 QAKHGEYTD--ESAALIKDEKLLPDRVLDQHTLSKEQW 102
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 55.6 bits (128), Expect = 3e-08
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Frame = +2
Query: 257 FGLQYTDSKGDLTWIKLYKKVMQQ---DVKKENPLQFKFRAKFYPEDVADELIQEITLKL 427
FGLQY KGD W+ L K V +Q + + KFR K++ + A L +EI L
Sbjct: 625 FGLQYR-KKGDDWWLDLAKPVAKQLSNHGRIAAVVTLKFRVKYFVCN-AYSLQEEIARYL 682
Query: 428 FYLQVKNAILSDEIYCPPETSVLLASYRSKPD---TENTIPLCTGRDSWPMTVYFLKE*P 598
+YLQ+K +L+ + C + +V+LASY ++ D T +I + + +W M +KE
Sbjct: 683 YYLQLKKNVLAGLLLCDEQAAVVLASYIAQGDFAYTPISIKVVSANGNWQM----IKELH 738
Query: 599 TNTR 610
TN R
Sbjct: 739 TNLR 742
>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 54.4 bits (125), Expect = 7e-08
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 FGLQYTDSK-GDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFY 433
FGL+Y D K G W++ + + +Q K PL F F KFYPE+ L ++IT F
Sbjct: 49 FGLRYIDEKDGQFNWLEGDRSIKRQMGKA--PLHFYFAVKFYPENPTT-LREDITRYQFV 105
Query: 434 LQVKNAILSDEIYCPPETSVLLASY 508
LQ++ +L I C LLASY
Sbjct: 106 LQLREDLLKGRIQCSNPIHALLASY 130
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 144 VRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLRE 248
V+V +D++ E I +TT G LFDQV IGL E
Sbjct: 11 VQVAGLDSDYECPIDKTTKGDHLFDQVCDHIGLAE 45
>SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 254 VFGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLF 430
+FGLQYT G L W+ + K++ Q + P F+F KFYP + + + ++ +L
Sbjct: 67 IFGLQYTSWEDGALNWLDMSKEIRSQ---RSKPYHFQFAVKFYPRNPRE--LDPVSRELM 121
Query: 431 YLQVKNAILSDEIYCP 478
LQVK++++ + P
Sbjct: 122 CLQVKDSLVRGKFLKP 137
>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
Length = 573
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 362 FRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASY 508
FR K+Y E++ L Q+ T L+YLQ++ +L I+ ET++LLASY
Sbjct: 297 FRVKYYVENIC-LLQQQSTRHLYYLQLRKDVLEGGIFVHEETAMLLASY 344
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 511 VQARHGEHNPALHGPGFLANDRLLPQR 591
+QA G++N ++HG + + LPQR
Sbjct: 346 LQAEVGDYNQSVHGNDYFVPEHYLPQR 372
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +2
Query: 224 CEDDRPPRGV--VFGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVA 394
C+ PR FGLQY D + G+ W++L+K + Q +K+ L +F + +P +
Sbjct: 51 CDHTDVPRDARRYFGLQYVDRNDGETNWLELHKPIYGQ--QKDKTLSVQFVVRVFP--LN 106
Query: 395 DELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASY 508
++ I + LQ+K+ + ++ + LL SY
Sbjct: 107 PLRMEPIVQRWILLQMKDLLSRGKVKVSLQKHALLDSY 144
>SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 186 QQTTTGKQLFDQVVKTIGLREVW 254
+Q+ G +LFD VV+T+G+RE W
Sbjct: 26 KQSAKGSELFDLVVRTLGVRETW 48
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 FGLQYTDS-KGDLTWIKLYKKVMQQDVKKENPLQFKFRAK 373
FGL Y + G TW++L K+V+ ++ + +PL F +
Sbjct: 49 FGLSYAEEGSGAQTWLRLDKRVLDHELPRHDPLILLFAVR 88
>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
Length = 445
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 464 EIYCPPETSVLLASYRSKPDTENTIPLCTG-RDSWPMTVYFLKE 592
EIY E VLL Y+ T+ LC G +S+P+TV + E
Sbjct: 82 EIYVKEEEEVLLPYYKVNEKVSLTLLLCRGISESYPITVIYDNE 125
>SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 248 GVVFGLQYTDSKGDLTWIKLYKKVMQQDVKKENP 349
G V+ +Y++ K D TW +Y+K + + V ++ P
Sbjct: 22 GSVYARKYSEFKDDQTWTSMYEKNLGRKVSEQPP 55
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 129 GKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGL 242
G++M + +L+ I+ TT +QL++QV+K IG+
Sbjct: 278 GRRMVSVIVLNGQKLQMMIETNTTTQQLYEQVIKYIGI 315
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 428 FYLQVKNAILSDEIYCPPETSVLLASYRSKPDTENTIPLCTG 553
FYLQ++ +L +YC E ++ L + +T + P G
Sbjct: 426 FYLQLRKDLLDCRLYCHEEAALTLGGLALQAETGDYTPALGG 467
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 170 FRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCIIFLKGGSLKP 30
F V DVHL +G+ + + D+ ST+C + G S+ P
Sbjct: 935 FTVCESKFDVHLMCAGSSDNFVPKLPSCDRFVSTICCVSASGTSMPP 981
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 28.3 bits (60), Expect = 5.6
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +2
Query: 203 EATLRSSCEDDRPPRGVVFGLQYTDSKGDLTWIKLYKKVMQQ--DVKKENPLQFKFRAKF 376
+ L C++ + FGL+Y + ++ W+ L V+ Q P + + KF
Sbjct: 24 QEVLDKVCDELKIKEKNYFGLKYCVNDTNV-WLNLRNPVLTQLRPHLPGKPYRLRLEVKF 82
Query: 377 YPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYRSKPD 523
+ EL QE T FY +KN I + E +V L + ++ +
Sbjct: 83 FV--APKELQQEETRWQFYFCLKNQISEGKFNLTREKAVRLCALMAQSE 129
>SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 499 GFVPVQARHGEHNPALHGPGFLAN-DRLLPQRVTDQHK 609
G V RH N HGPG + R +P ++T Q +
Sbjct: 320 GMVTTPPRHVPDNTTRHGPGTITTPPRHVPDKITQQSR 357
>SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 126 GGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIG 239
GGK N RVT+ +E E +QQ + + +KT G
Sbjct: 26 GGKPGNTRVTSSKSEFEKLVQQLESATVRIESRLKTPG 63
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +2
Query: 263 LQYTDSKGDLT-WIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQ--EITLKLFY 433
++ D KG W++LY+K Q+ ++ + KFRAK D+ ++Q E K
Sbjct: 394 MENVDKKGFFQKWLELYEKKYQEWSEENFDSKDKFRAKH--NDLYQSIVQQAEKNYKTNE 451
Query: 434 LQVKNAILSDEIYCPPETSVLLASYRSKPDTENTIPLCTG 553
L + N +S+ S+ L T TI + G
Sbjct: 452 LPMINNYVSEASLNQASMSIALVFAAEAYHTRGTIRVVVG 491
>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
Length = 1703
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 191 DDHREATLRSSCEDDRPPRGVVFGLQY-TDSKGD-LTWIKLYK 313
DDH TL E PP G+V+ + ++G+ L W KL K
Sbjct: 36 DDHPIPTLVGKIESPIPPEGMVYDYLFERKNRGNWLQWTKLIK 78
>SB_55615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 253 GLRSSVHRLQGRPHLDQVV-*EGDATRRQERES 348
GL+ + L G+ HLDQ EG+ T + +ES
Sbjct: 95 GLKEGIENLAGQKHLDQTTPKEGNKTEPKNKES 127
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 434 LQVKNAILSDEIYCPPETSVLLASYRSKPDTENTI 538
L++ + EI C P+ ++ LA+ RS+ ENT+
Sbjct: 974 LEIVTKQSATEIECDPDVAMRLATLRSEASFENTL 1008
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 251 VVFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLF 430
+VFG +Y + T I + M + ENPL + +F+P V ++ + +T +
Sbjct: 458 LVFGKRYGLDDAEFTDIVATTESMAKLASPENPLIYMPWLRFFPLQVVKKMKETVTARDR 517
Query: 431 YLQVK 445
+Q K
Sbjct: 518 LIQRK 522
>SB_37101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 263 LQYTDSKGDLTWIKLYKKVMQQDVKK-ENPLQFKFRAKFYPEDVADELIQEITLKLFYLQ 439
+Q+ D+ ++ + ++++ V K EN +++KF +K D AD++ + K ++Q
Sbjct: 2 VQHKDNMSGFMFLLVMDWILRRSVGKGENGIRWKFTSKLDDLDFADDIALLSSTK-HHIQ 60
Query: 440 VKNAILSDE 466
K A L E
Sbjct: 61 EKTARLDGE 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,110,116
Number of Sequences: 59808
Number of extensions: 446614
Number of successful extensions: 1256
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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