Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060715.seq
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    30   1.1  
At4g01560.1 68417.m00202 brix domain-containing protein contains...    29   2.0  
At2g22900.1 68415.m02718 galactosyl transferase GMA12/MNN10 fami...    29   2.6  
At5g20200.1 68418.m02406 nucleoporin-related contains weak simil...    29   3.5  
At4g17483.1 68417.m02615 palmitoyl protein thioesterase family p...    29   3.5  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    28   4.6  
At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibit...    28   6.1  
At4g24240.1 68417.m03479 WRKY family transcription factor contai...    27   8.0  
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ...    27   8.0  

>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 93  VCVIITIKMVAGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWSS 260
           +C ++   +V G K +NV++  MD     ++   +TG+   + + KT+GL    SS
Sbjct: 175 ICPVLERLVVDGTKGVNVKIPNMDVPNLRSLSFRSTGELRIELLRKTLGLPTCLSS 230


>At4g01560.1 68417.m00202 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 343

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +2

Query: 302 KLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPP 481
           K  K   +Q  +K+   Q K RA+   E  A EL +E   K+    ++N   SDE  C P
Sbjct: 44  KRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDETVCRP 103

Query: 482 ETSVLLA 502
           +   L A
Sbjct: 104 DDEELFA 110


>At2g22900.1 68415.m02718 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 449

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 502 FVPVQARHGEHNPALHG-PGFLANDR 576
           F P   R+ EHN  +HG PG + NDR
Sbjct: 211 FTPPWRRYKEHNLVVHGWPGVIYNDR 236


>At5g20200.1 68418.m02406 nucleoporin-related contains weak
           similarity to Nucleoporin NUP1 (Nuclear pore protein
           NUP1) (Swiss-Prot:P20676) [Saccharomyces cerevisiae]
          Length = 762

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 210 LFDQVVKTIGLREVWSSVFSTPTPRATSL 296
           LFD+  + IG ++  S +++TPTP A S+
Sbjct: 213 LFDKAKEPIGGKDANSEIWATPTPLAKSI 241


>At4g17483.1 68417.m02615 palmitoyl protein thioesterase family
           protein
          Length = 300

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 421 ETLLSTGEKRDFIR*NILPSGDLGVAGFVPVQARHGEHNPALHGPGFLANDRLLPQRVTD 600
           E LL      DF++ +I PSG + + G +     H ++ P L+       +     R T+
Sbjct: 152 EALLKLEVYTDFVQDHIAPSGYIKIPGEISKYLEHSKYLPKLNNERPDERNSTFKDRFTN 211

Query: 601 QHKM 612
            H +
Sbjct: 212 LHNL 215


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 320 MQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLL 499
           +Q + KKE  L  + + K  PE+   E+  E + +   +Q ++A    +    PET+   
Sbjct: 83  IQPEEKKEKVLAEETKQKVVPEESKQEVPPEESKREVVVQPESAKPETKSESKPETTKPE 142

Query: 500 ASYRSKPDTE 529
            +  +KP+T+
Sbjct: 143 TTSETKPETK 152


>At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 166

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 78  DLIRCVCVIITIKMVAGGKQMNVRVTTMDAELE 176
           D+ RC  + + +K V GG + N   T MD  L+
Sbjct: 117 DIFRCTDITMYLKDVVGGNRDNTSKTFMDMTLQ 149


>At4g24240.1 68417.m03479 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 353

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 294 LGSSCIRR*CNKTSRKRIHCSS--NSEPNSILRMSPMSS 404
           L S+ ++R CN +   R HCS    S    ++R+  +SS
Sbjct: 236 LSSASLKRRCNSSPSSRCHCSKKRKSRVKRVIRVPAVSS 274


>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
           weak similarity to Nucleoporin NUP42 (Nuclear pore
           protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
           cerevisiae]; contains Pfam profile  PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 311 KKVMQQDVKKENPLQFKFRA----KFYPEDVADELIQEITLKLFYLQVKNAI 454
           K+VMQ D K E P+ +K       K++P DV  ++  E    + Y + K  I
Sbjct: 112 KRVMQDDFKNERPM-WKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGI 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,532
Number of Sequences: 28952
Number of extensions: 305439
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)