Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060714.seq
         (633 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759; ...    33   5.7  
UniRef50_Q95Z58 Cluster: Krueppel-like protein; n=3; Plasmodium|...    33   7.5  
UniRef50_Q84641 Cluster: A327R protein; n=1; Paramecium bursaria...    32   10.0 

>UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759;
           n=2; Homo sapiens|Rep: CDNA FLJ45488 fis, clone
           BRTHA2003759 - Homo sapiens (Human)
          Length = 130

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
 Frame = +3

Query: 240 YLQSIHFFLVCLFKYRY-YLYVIT-------VYNSLNIFIYVCV*LF 356
           YL    +  +CL+ Y Y YLY+ T       ++  L+IFIY+C+ L+
Sbjct: 46  YLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHIFIYICICLY 92


>UniRef50_Q95Z58 Cluster: Krueppel-like protein; n=3; Plasmodium|Rep:
            Krueppel-like protein - Plasmodium falciparum
          Length = 1266

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 231  FSNYLQSIHFFLVCLFKYRY-YLYV-ITVYNSLNIFIYVCV 347
            F +  Q ++   +C++KY Y Y+Y+ I +Y  + IFIY+ +
Sbjct: 1192 FLDVAQKVNMIYICIYKYVYIYIYIYIYIYIYIYIFIYLYI 1232


>UniRef50_Q84641 Cluster: A327R protein; n=1; Paramecium bursaria
           Chlorella virus 1|Rep: A327R protein - Paramecium
           bursaria Chlorella virus 1 (PBCV-1)
          Length = 108

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 228 NFSNYLQSIHFFLVCLFKY-RYYLYVITVYN 317
           +FS+Y   + +FL C+ K+  Y LY++T YN
Sbjct: 77  SFSSYQLGVQYFLSCILKHILYRLYILTGYN 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,145,960
Number of Sequences: 1657284
Number of extensions: 8902755
Number of successful extensions: 18935
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18914
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)