Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060714.seq
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   0.97 
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   5.2  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    26   5.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 12  SILIVCIA--ISPGRRPLADPFYILTF 86
           SI+ +C A  +SP  RP A+PF  L++
Sbjct: 75  SIIAICFACLLSPSLRPYAEPFIFLSY 101


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 234 SNYLQSIHFFLVCLFKYRYYLYVITVYNSLN 326
           S +   IH  L   F  + Y  V+T+Y +LN
Sbjct: 307 SQFTLKIHERLASFFSQKRYRNVVTIYGALN 337


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 491 HGSNDRKCRRKTIFGDELQRSDAHNNTHNVS 399
           + S+D  C  KT+   + + +   NN H  S
Sbjct: 231 YNSSDESCSNKTVASSQRRGTPGSNNVHTAS 261


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 446 HQRLFC-GDTYDRLSRASGHSRDYI 517
           + +L C GDT+  + R  GH R+Y+
Sbjct: 321 YAKLCCQGDTFVAIRRLRGHLREYV 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,790
Number of Sequences: 5004
Number of extensions: 39026
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)