Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060714.seq
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    28   7.1  
12_01_1002 + 10150843-10151109,10151253-10151261                       27   9.4  
12_01_0165 - 1237812-1237910,1237952-1238251                           27   9.4  
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    27   9.4  

>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 515 YNRGCVLTHGSNDRKCRRKTI-FG-DELQRSDAHN 417
           Y  G VL HG N+RK R  ++ FG   + RS  H+
Sbjct: 119 YRLGSVLFHGKNERKQRPASVDFGCPSVDRSSTHS 153


>12_01_1002 + 10150843-10151109,10151253-10151261
          Length = 91

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 536 DRTNYRLYNRGCVLTHGSNDRKCRRKTIFGDELQRSDAHNN 414
           D T    Y   C+L  G+ND K     + G    +++ HNN
Sbjct: 35  DYTKINAYLNDCILYRGAND-KADSSPVCGISRWKNEGHNN 74


>12_01_0165 - 1237812-1237910,1237952-1238251
          Length = 132

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 231 FSNYLQSIHFFLVCLFKYRYYLYVITVYNSLNIFIYVCV*LFGN 362
           FSN + S H+ ++ L    YY YV+T+   L+ +++    +FGN
Sbjct: 95  FSNGILSYHYTVLGL---NYYYYVVTIQIDLSFYLFR---VFGN 132


>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 NYLQSIHF-FLVCLFKYRYYLYVITVYNSLNIFIYVCV*LF 356
           ++L SI F FLV +     + ++I + N  N+F+Y  V +F
Sbjct: 518 HFLSSIPFLFLVTISSSLVFYFLIGLRNEFNLFMYFVVTMF 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,973
Number of Sequences: 37544
Number of extensions: 225544
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)