Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060714.seq
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.5  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   2.5  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   2.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 291 YLYVITVYNSLNIFIYVCV*LFGNMFI*FC 380
           Y  +    N LNI     + LFG MF  FC
Sbjct: 49  YNIISAAVNRLNIPANEILELFGRMFFEFC 78


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 444 VTKDCFAATLTIV*AVRQDT 503
           VT  C  A LT+V  + QDT
Sbjct: 5   VTVTCLLAALTVVRGIDQDT 24


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 444 VTKDCFAATLTIV*AVRQDT 503
           VT  C  A LT+V  + QDT
Sbjct: 5   VTVTCLLAALTVVRGIDQDT 24


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 291 YLYVITVYNSLNIFIYVCV*LFGNMFI*FC 380
           Y  +    N LNI     + LFG MF  FC
Sbjct: 49  YNIISAAVNRLNIPANEILELFGRMFFEFC 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,325
Number of Sequences: 438
Number of extensions: 3453
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)