Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060714.seq
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ...    29   1.9  

>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
           (SPL1) identical to squamosa promoter binding
           protein-like 1 [Arabidopsis thaliana] GI:5931655;
           contains Pfam profile PF03110: SBP domain
          Length = 881

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 476 RKCRRKTIFGDELQRSDAHNNTHNVSYIYLLPAKLNKHITEESHTYVN 333
           + CR  T F  E    D      + SYI+L+  K+NK  T E H  VN
Sbjct: 747 KTCRDSTGFTPE----DYARLRGHFSYIHLIQRKINKKSTTEDHVVVN 790


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,114,167
Number of Sequences: 28952
Number of extensions: 191110
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)