Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060712.seq
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 46 3e-05
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 38 0.005
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 29 3.1
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 3.1
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 29 4.1
01_07_0224 - 42121011-42122486 28 7.2
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 7.2
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/110 (23%), Positives = 53/110 (48%)
Frame = +3
Query: 300 QWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNESM 479
+WPE L F+F C+ + + +E + +F+S+ G +L+ ++ +L+ LQ S
Sbjct: 115 EWPELLPFIFQCSQSPQEDHREVALILFSSLTETIGTTFQSHLNDLQPILLKCLQDEASS 174
Query: 480 ALRTQGS*S*GAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSA 629
+R + G+FI + + K F D + ++ V + ++D A
Sbjct: 175 RVRIAALKAVGSFIEYVNDGGDVVKIFRDFVPSILNVSRQCLANGEEDVA 224
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 231 LTKKGL*CVSELARNHIDDDGNNQWPEFLQFMFTCASAQD-PNIKEAGIRMFTSVPGVFG 407
+ KK +SELA + + N W E L F+F AS + PN++E+ + +F +
Sbjct: 127 IAKKVCDAISELAALLLPE---NAWAELLPFLFRAASGPEAPNLQESALLIFARLADYIA 183
Query: 408 NRQTENLDVIKGMLISAL 461
++L I +L SAL
Sbjct: 184 ESLLDHLMTIHNLLASAL 201
Score = 33.1 bits (72), Expect = 0.19
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Frame = +1
Query: 34 ETKVVHLVNSIQNADIAEDVRQTAAVLLRRLF---------SAXXXXXXXXXXXXQQTVL 186
E + L +S+ + D+R AAVLLR+L SA Q L
Sbjct: 52 EPLALRLASSLSSPATPADLRAMAAVLLRKLLSPTPSSDASSAAAAPVWPHLSPAGQAAL 111
Query: 187 REQLLLTLQMDLSQYLRRKVCDVSLNWLGIIL 282
++ LL LQ D + + +KVCD ++L
Sbjct: 112 KQHLLSALQSDPPKPIAKKVCDAISELAALLL 143
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 252 CVSELARNHIDDDGNNQWPE 311
C+ EL + DGNN WPE
Sbjct: 1666 CIKELCYKFQNSDGNNTWPE 1685
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -1
Query: 261 QRHITNLSS*VLGKIHLKGE*QLFSEHCLLLKWQFREELKEFCT 130
QRH+TN ++ ++ L E Q+F HC+L ++FR+E ++ T
Sbjct: 735 QRHVTNHG--MIRQLELLRE-QMFRGHCVLDAFRFRDEEEDEVT 775
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 252 CVSELARNHIDDDGNNQWPE 311
C+ EL + DGNN WPE
Sbjct: 1662 CIKELCYKFQNPDGNNTWPE 1681
>01_07_0224 - 42121011-42122486
Length = 491
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 261 ELARNHIDDDGNNQWPEFLQFMF 329
+L ++D G +WP F+QF F
Sbjct: 7 DLGGGGVEDGGGKKWPGFVQFFF 29
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 4 HEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLF 129
+ED+Y+N+P +V+ N + I ++V + +LRR F
Sbjct: 2819 YEDSYHNLPPLLEVMQARNPGTHMAILDEVNEYGENVLRRAF 2860
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,880,053
Number of Sequences: 37544
Number of extensions: 342178
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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