Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060712.seq
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     89   3e-18
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 50/133 (37%), Positives = 77/133 (57%)
 Frame = +3

Query: 237 KKGL*CVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQ 416
           KK    VSEL+++ +DDDG N W E L+F+F C ++    +KE+ + +F S PGVFGN+Q
Sbjct: 76  KKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELKESALNIFCSFPGVFGNQQ 135

Query: 417 TENLDVIKGMLISALQPNESMALRTQGS*S*GAFILLHDKEPIIQKHFSDVLLPLMQVIV 596
              L+VIK ML   +    S A+R   + +  AFI     E   Q+ F +++  ++Q + 
Sbjct: 136 DHYLNVIKQMLWQCINDQTSQAVRFVAARASCAFITDQVGE-AKQRQFVELVPGIIQTVR 194

Query: 597 LSIEAADDDSALK 635
            S  A+ DD+ LK
Sbjct: 195 ESALASGDDAVLK 207



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +1

Query: 88  DVRQTAAVLLRRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCD 252
           +VRQ AAVLLRR+F+A             Q +++E LL  +  +    +R+K+CD
Sbjct: 27  EVRQMAAVLLRRIFTA-TVDFLKKIDENTQNLMKESLLKGIHEEQDSNVRKKICD 80


>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = +1

Query: 250 DVSLNWLGIILMTMATTSGLSSYSSCLPVPVRKIQTSKKLVLECLRLYQVYLEIVR 417
           D+S++W GI+L+T      LS  S C    VRK       VLE L L Q+  +  R
Sbjct: 302 DLSISWHGILLVTGDVNVDLSRPSECY---VRKYMD----VLESLNLTQLVTKATR 350


>SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -2

Query: 362 FDVWILRTGTGKH-EL*----ELRPLVVAIVINMIPSQFRDTSQTFLRKYWERSI 213
           F  W    G+G+H EL      L  +   + +N IPSQF    +  + KYW++ I
Sbjct: 119 FSQWFFIRGSGQHSELDYPCVSLSSVDTILFVN-IPSQFYARIKELILKYWDKGI 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,851
Number of Sequences: 59808
Number of extensions: 397116
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)