Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060712.seq
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    46   2e-05
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    27   8.6  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 31/134 (23%), Positives = 61/134 (45%)
 Frame = +3

Query: 231 LTKKGL*CVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 410
           + KK    +SE+A N IDD G+  W   L+ M  C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 411 RQTENLDVIKGMLISALQPNESMALRTQGS*S*GAFILLHDKEPIIQKHFSDVLLPLMQV 590
           R    L  +K +++        + ++     +  AF + +D+E  + +  + ++  ++QV
Sbjct: 160 RLAHFLPTLK-VVLEKCMATPDLQIKATAVRAVIAFAVDNDEEKDVVRLMTSLVPNVLQV 218

Query: 591 IVLSIEAADDDSAL 632
              + +  D D  L
Sbjct: 219 CNETSDEDDSDGPL 232


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 352  QTSKKLVLE-CLRLYQVYLEIVRLKTWM 432
            +T  K VL+ C+R+ Q   E+ RLK W+
Sbjct: 1546 RTDLKSVLDQCIRILQAMREMARLKNWL 1573


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 504 FNCPEFAKPLIHLAAKQILTCLLSHP 427
           F+CP+ A P +   + Q  TCL S+P
Sbjct: 492 FSCPDGASPFLDPNSGQPATCLASNP 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,223
Number of Sequences: 27780
Number of extensions: 308509
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)