Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060712.seq
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.35 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 451 INMPFITSKFSV*RFPNTP-GTDVNILIPA--SLMFGSCALAQVNMNCRNSGHWLLPS 287
           I+ P I+  F+   FP TP G +V ++     + +  +  + Q    C+  G W LPS
Sbjct: 189 ISCPEISVNFA--HFPATPTGREVALIEQTIGTCVANAVVIEQPTFLCKGDGKWYLPS 244


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 9   GRIQQHSNRNKSSAPSEFNSKCRHCRR 89
           G I+  + + K+  P EF  +C+  R+
Sbjct: 134 GNIEAVTTKEKAKFPQEFFPECKWSRK 160


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 633 SMQSHHQLLQ*TELLPASKVEEHH 562
           ++Q HH L      L ++ V++HH
Sbjct: 137 TLQRHHHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,311
Number of Sequences: 438
Number of extensions: 3576
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)