Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060712.seq
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    46   2e-05
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    46   2e-05
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    30   1.5  
At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related s...    29   3.4  
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    28   4.5  
At3g44680.1 68416.m04805 histone deacetylase, putative similar t...    28   6.0  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   7.9  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
 Frame = +3

Query: 30  NRNKSSAPSEFNSKCRHCRRCASNG-GRAVTKII*CRIL*-----VLPEIAI*AADSAQR 191
           N  K S P   + K  H  + + +  GRA+  ++  ++L      + P +++    S + 
Sbjct: 47  NLAKQSNPDTLSLKLAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKS 106

Query: 192 TIVTHPSNGSFPVLTKKGL*CVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAG 371
           +++    +     ++KK    VSELA   + ++G   WPE L F+F C ++  P ++E+ 
Sbjct: 107 SMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESA 163

Query: 372 IRMFTSVPGVFGNRQTENLDVIKGMLISALQPNES 476
             +   +    G   T ++  + G+ +  L  N +
Sbjct: 164 FLILAQLSQYVGETLTPHIKELHGVFLQCLSSNSA 198


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
 Frame = +3

Query: 300 QWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNESM 479
           +WP+ L F+F C+ +   + +E  + +F+S+    GN        ++ +L+  +Q   S 
Sbjct: 115 EWPDLLTFLFQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSS 174

Query: 480 ALRTQGS*S*GAFI-LLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSAL 632
            +R     + G+F+   +D + +++  F D +  ++ V    I + ++D A+
Sbjct: 175 RVRVAALKAVGSFLEFTNDGDEVVK--FRDFIPSILDVSRKCIASGEEDVAI 224


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  AYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 108
           A+ N+PTET + H    + NA IA DV +  A
Sbjct: 476 AWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related
           similar to Chain A, Crystal Structure Of Human
           Tyrosyl-Dna Phosphodiesterase (Tdp1) [Homo sapiens]
           GI:20150581
          Length = 605

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 NMIPSQFRDTSQTFLRKYWER 219
           N IPS  ++  + FL+KYW R
Sbjct: 432 NAIPSPLKNVEKPFLKKYWAR 452


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -2

Query: 431 IQVFSLTISKYTWYRRKHSNTSFFDV 354
           + +  + +  + W+R++H+  +FFDV
Sbjct: 258 VSLIFIAVGLFLWWRQRHNQNTFFDV 283


>At3g44680.1 68416.m04805 histone deacetylase, putative similar to
           histone deacetylase-1 (HD-1) [Gallus gallus] GI:2791684;
           contains Pfam profile PF00850: Histone deacetylase
           family; identical to cDNA  histone deacetylase partial
           cds GI:21637258
          Length = 426

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 214 MDLSQYLRRKVCDVSLNWLG 273
           +D ++ L  K+CD+++NW G
Sbjct: 114 IDAARRLNNKLCDIAINWAG 133


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  NRNKSSAPSEFNSKCRHCRRCASNGG 107
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQP---RYKCKNCCRCWTHGG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,692,234
Number of Sequences: 28952
Number of extensions: 280002
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)