Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060711.seq
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5E0J4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_A7EQH7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_Q2SEC0 Cluster: Uncharacterized protein conserved in ba...    33   7.7  
UniRef50_Q44417 Cluster: CelB protein; n=3; Agrobacterium tumefa...    33   7.7  

>UniRef50_A5E0J4 Cluster: Putative uncharacterized protein; n=1;
            Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
            uncharacterized protein - Lodderomyces elongisporus
            (Yeast) (Saccharomyces elongisporus)
          Length = 1660

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = -2

Query: 360  APPGNFYHEAFFYLHI-------CIKQITTIVYKLQVKIFNIKSGLQLKKKTRCIQKTYN 202
            APP +FY   FF            I+++ T     +VK+ +I   ++L+K+ R I + + 
Sbjct: 1139 APPEHFYISTFFITFRNFVTGIDFIEELITRFEVHKVKVNDINYEIKLRKRRRLIARMFQ 1198

Query: 201  NWTDAFFS-PTYVGSLKRLFQLYSEG 127
             W +++++  T    L  L   Y+EG
Sbjct: 1199 LWMESYWNHETDYSLLTTLINFYNEG 1224


>UniRef50_A7EQH7 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 613

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = -2

Query: 357 PPGNFYHEAFFYLHICIKQITTIVYKLQVKIFNIKSGLQLKKKTRCIQKTYNNWTDAFFS 178
           PPG ++ +AF+  +I I ++TT++  L  K+ ++ +G      T  I   Y ++ D F++
Sbjct: 373 PPGVYFSQAFYGYNISISEMTTLISPLIEKMKDVSNGSLSINYT--ITDVYPSYLDFFYA 430


>UniRef50_Q2SEC0 Cluster: Uncharacterized protein conserved in
           bacteria; n=1; Hahella chejuensis KCTC 2396|Rep:
           Uncharacterized protein conserved in bacteria - Hahella
           chejuensis (strain KCTC 2396)
          Length = 230

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 345 NFPGGLKSVWVSKWPLNIFYCLKQ*R*SKWSTFY*ILPAFPYTINAFIL 491
           N PGG  S W  KW  N  Y  +Q    +W  +Y + P + + I   +L
Sbjct: 22  NLPGGFGSAW-DKWLQNSLYASQQSLGQRWLDYYLVAPWWRFMIMPKVL 69


>UniRef50_Q44417 Cluster: CelB protein; n=3; Agrobacterium
           tumefaciens|Rep: CelB protein - Agrobacterium
           tumefaciens
          Length = 698

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 279 LQVKIFNIKSGLQLKKKTRC-IQKTYNNWTDAFFSPTYVG 163
           LQV    +  G+Q + +T C IQ TY+ WTD   + TY+G
Sbjct: 201 LQVGSNVVTLGVQQRHRTDCTIQSTYDLWTDVNPANTYIG 240


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,814,169
Number of Sequences: 1657284
Number of extensions: 12987796
Number of successful extensions: 24757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24750
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)