Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060711.seq
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   3.0  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   7.0  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.3  

>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 97  LVTNIEFRILIFLYHKQFSILNNN 26
           L+T ++++IL+  YHK  S   NN
Sbjct: 352 LITWLKYKILLIYYHKSSSTYKNN 375


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 596 GFGSLK*RVLAITLTYRVFSLIQFSLTQVYC 504
           G G++   +L     YR+FS + F+  QV+C
Sbjct: 189 GVGNVLGYLLGYLPLYRIFSFLNFTQLQVFC 219


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 632 LSYRGFWFLANRGFGSLK*R--VLAITLTYRVFSLIQFSLTQVYCK*SEKDEGING 471
           L + G + L N   G+ K R  VL I ++    +LI+F    VY K S +D   +G
Sbjct: 53  LVFMGIYRLTNMVEGNTKLRTFVLLILVSAVFLTLIEFPCRNVYAKISTEDNQPDG 108


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
          type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 1  RHEPASKCNYCLKLKIVCDK 60
          RH   + C  C +LK+ CD+
Sbjct: 15 RHRKITSCRECHRLKLKCDR 34


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 22 CNYCLKLKIVCDKGR 66
          C YC + KI CDK R
Sbjct: 26 CLYCRRRKIKCDKNR 40


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 218  YRKL--ITTGQMPFFLLPMLVALRGYFNFIVRGRSQGYLKLWVSH 90
            YR L  + +  +PF L      L G  +FI       YL+LW+SH
Sbjct: 1982 YRMLPSVASLSLPFLLYCASFLLIGISSFI---NENMYLRLWISH 2023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,081
Number of Sequences: 5004
Number of extensions: 60212
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)