Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060711.seq
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293     29   2.4  
10_06_0183 - 11562576-11562824,11563894-11564000,11564494-115645...    29   3.1  
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752...    29   3.1  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   7.2  

>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
          Length = 352

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 212 KLITTGQMPFFLLPMLVALRGYFNFIVRGRSQGYLKLWVSHQYRISNFNLPLS 54
           K I TGQ P    P LV ++    F      +G    WV H+YR+ + ++P S
Sbjct: 109 KEIFTGQPP--ATPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRLHSKSIPKS 159


>10_06_0183 -
           11562576-11562824,11563894-11564000,11564494-11564572,
           11564659-11564745,11570563-11570817,11570922-11571071,
           11571163-11571798
          Length = 520

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 347 FPGGAQICVG*QVAS-QYFLLLEAM----KMKQMVHILLNFTCISIHH*CLHPFHFIYS 508
           F GG +IC G  +A  Q  ++L  +    K        +N TC+ +    +HP +F ++
Sbjct: 449 FGGGERICAGNMLARLQLTIMLHHLSCGYKYSLNFQTFINSTCVQLFSVIIHPLYFFFN 507


>06_03_0037 +
           15773444-15773647,15773862-15774367,15775011-15775246,
           15775483-15775685,15775989-15776279,15776997-15777084,
           15777539-15777861
          Length = 616

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 315 ICIKQI-TTIVYKLQVKIFNIKSGLQLKKKTRCIQKTYNNWTDAFFSPTYVGSL 157
           +CI Q  T I ++   K F  K GL      R +    + W  AFF   Y GS+
Sbjct: 264 VCINQTYTPIEFEYAWKEFIDKFGLHDSTVLRDLYDIRHRWVPAFFKEDYCGSV 317


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 607  SLIEVLGA*NDGSWLLLSLIEFSHLSSSHLPRFTVNKVKR 488
            SL+E L A   G W+ +  IE S    S LP F ++K+ +
Sbjct: 1353 SLVEKLDA---GIWIQIPCIELSCSEQSSLPTFIMSKISK 1389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,886
Number of Sequences: 37544
Number of extensions: 333176
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)