Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060711.seq
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)                  30   1.4  
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 28   7.4  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 28   7.4  
SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.8  

>SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)
          Length = 743

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 173 PMLVALRGYFNFIVRGRSQGYLKLW 99
           P+L+ L G  NF+V G SQGY+K W
Sbjct: 365 PVLLDLCG--NFLVAGTSQGYVKCW 387


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -3

Query: 452 NLIKCGPFASSSLLQAIKNIERPLANPHRFEP 357
           N++K  P +SSS ++A++   +PLA  +R EP
Sbjct: 136 NMLKNAPPSSSSKVEALEPCFKPLAPKYRSEP 167


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 204 YKFSVCTWFFFLIAIQILY*IF*LVIYKLW 293
           Y F    W  +L+ +  +  ++ +V+YKLW
Sbjct: 190 YAFMAVVWCLYLVQLIAMAVLYSIVVYKLW 219


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 204 YKFSVCTWFFFLIAIQILY*IF*LVIYKLW 293
           Y F    W  +L+ +  +  ++ +V+YKLW
Sbjct: 175 YAFMAVVWCLYLVQLIAMAVLYSIVVYKLW 204


>SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 917

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 415 CFKQ*KILRGHLLTHTDLSP 356
           CFKQ + L+ HL  HT+  P
Sbjct: 402 CFKQSRTLKAHLTIHTEQKP 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,623,852
Number of Sequences: 59808
Number of extensions: 404956
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)