Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060711.seq
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 568 KTRHFKLPKPLLARNQKP 621
           +T HF LP+P LAR Q P
Sbjct: 662 RTNHFDLPEPPLARRQDP 679


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 540 ENSISESNSQDPSF*APKTSISEKPETSVRE 632
           ++++S ++S   S+  P TS SE+P +S R+
Sbjct: 239 DSTVSTTSSNTESYEQPSTSPSERPRSSTRD 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,272,449
Number of Sequences: 27780
Number of extensions: 324818
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)