Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060711.seq
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16566.1 68417.m02507 histidine triad family protein / HIT fa...    29   3.5  
At4g20410.1 68417.m02979 gamma-soluble NSF attachment protein / ...    28   4.6  
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    27   8.0  

>At4g16566.1 68417.m02507 histidine triad family protein / HIT
           family protein contains Pfam domain, PF01230: HIT family
           (histidine triad protein family)
          Length = 146

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 442 NVDHLLHLHCFKQ*KILRGHLLTHTDLSPPGKFL 341
           +VDHL HLHCF    + R   + +  L P G F+
Sbjct: 98  SVDHL-HLHCFALPYVPRWKAIKYKSLGPLGGFI 130


>At4g20410.1 68417.m02979 gamma-soluble NSF attachment protein /
           gamma-SNAP identical to gamma-soluble NSF attachment
           protein; gamma-SNAP [Arabidopsis thaliana] GI:6013206
          Length = 291

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 216 QKTYNNWT--DAFFSPTYVGSLKRLFQLYSEG*ISGVFKTMG*SPISNFE 73
           +K YN+ +  DAF       S  RL   Y+EG I  + K    S +SN +
Sbjct: 210 EKCYNDCSQIDAFLKSDQSRSASRLLTAYNEGDIEEIKKVASASTVSNLD 259


>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 449 NFTCISIHH*CLHPFHFIYSKPG 517
           N  C +IH  CL  FH +Y KPG
Sbjct: 525 NECCTTIHRNCLFGFH-VYLKPG 546


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,141
Number of Sequences: 28952
Number of extensions: 296616
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)