Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060708.seq
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 177 8e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 105 7e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 79 6e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 50 3e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 49 6e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 48 1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 41 1e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.056
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 32 0.074
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.097
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 30 0.22
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.39
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 29 0.39
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 0.91
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 28 0.91
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 1.2
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.1
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 2.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 2.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.8
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 3.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 6.4
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 6.4
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 8.5
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 8.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 8.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 177 bits (432), Expect = 8e-46
Identities = 78/86 (90%), Positives = 81/86 (94%)
Frame = +2
Query: 2 GTSRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 181
G RH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 182 VAPEEHPVLLTEAPLNPKANREKMTR 259
VAPEEHP LLTEAPLNPK+NREKMT+
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQ 121
Score = 165 bits (400), Expect = 6e-42
Identities = 77/93 (82%), Positives = 85/93 (91%)
Frame = +1
Query: 229 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 408
P+ + + QI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYAL
Sbjct: 112 PKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYAL 171
Query: 409 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTA 507
PHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTA
Sbjct: 172 PHAIMRLDLAGRDLTDYLMKILMERGYTFSTTA 204
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 510 REIVRDIKEKLCYVALDFEQEMATAA 587
REIVRDIKEKLCYVALDFEQE+ TAA
Sbjct: 206 REIVRDIKEKLCYVALDFEQELQTAA 231
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 105 bits (251), Expect = 7e-24
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = +1
Query: 229 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 408
P + + + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L
Sbjct: 112 PVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVL 171
Query: 409 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTA 507
H + RLD+AGRD T YL+ +L +GY+F TA
Sbjct: 172 NHLVGRLDVAGRDATRYLISLLLRKGYAFNRTA 204
Score = 86.6 bits (205), Expect = 2e-18
Identities = 34/70 (48%), Positives = 54/70 (77%)
Frame = +2
Query: 44 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 223
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 224 LNPKANREKM 253
+NP ANREKM
Sbjct: 110 MNPVANREKM 119
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 513 EIVRDIKEKLCYVALDFE 566
E VR++KEKLCYV+ D E
Sbjct: 207 ETVREMKEKLCYVSYDLE 224
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.7 bits (230), Expect = 2e-21
Identities = 41/84 (48%), Positives = 63/84 (75%)
Frame = +1
Query: 256 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 435
+ +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEI 185
Query: 436 AGRDLTDYLMKILTERGYSFTTTA 507
GRD+TDYL L + G+ ++A
Sbjct: 186 GGRDVTDYLQLQLRKSGHELVSSA 209
Score = 91.9 bits (218), Expect = 7e-20
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GTSRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-EL 178
G +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQL 99
Query: 179 RVAPEEHPVLLTEAPLNPKANREKM 253
PEEHP+LLTE PL N+EK+
Sbjct: 100 NTLPEEHPLLLTEPPLANIRNKEKI 124
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 510 REIVRDIKEKLCYVALDFEQEM 575
+EIVR+IKEK CYVA DF E+
Sbjct: 211 KEIVREIKEKCCYVASDFRSEI 232
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 78.6 bits (185), Expect = 6e-16
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Frame = +1
Query: 229 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTV 384
P + +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194
Query: 385 PIYEGYALPHAILRLDLAGRDLTDYLMKILTER 483
P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 195 PVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 74.1 bits (174), Expect = 1e-14
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 47 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 223
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 224 LNPKANRE 247
LNP NRE
Sbjct: 133 LNPPENRE 140
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 49.6 bits (113), Expect = 3e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +2
Query: 89 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTRSCS 268
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K T
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK-TLETM 121
Query: 269 KHSTRPPCTSPSK 307
S R P T +K
Sbjct: 122 FESLRCPATYLAK 134
Score = 46.4 bits (105), Expect = 3e-06
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +1
Query: 256 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 435
+ MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 119 ETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHF 178
Query: 436 AGRDLTDYLMKILTERGY 489
+G + D L + L ++ +
Sbjct: 179 SGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.8 bits (111), Expect = 6e-07
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 QIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRL 429
+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+
Sbjct: 136 ELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRI 195
Query: 430 DLAGRDLTDYLMKILTERGYSF 495
G + YL+K+ + SF
Sbjct: 196 SWGGSQSSSYLLKLFQIKYPSF 217
Score = 45.6 bits (103), Expect = 6e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 35 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 211
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 212 TEAPLNPKANREKMT 256
TE NP R MT
Sbjct: 121 TEPLANPTYVRSTMT 135
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +1
Query: 256 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 435
Q FE P +A + ++ LYA G G+V+D G + PI +G + A +L L
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPL 226
Query: 436 AGRDLTDYLMKILTE 480
GR +T +L +L E
Sbjct: 227 GGRYMTQHLQNLLRE 241
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 104 PIEHGIVTNWDDMEKIWHHTF 166
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 46.4 bits (105), Expect = 3e-06
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = +1
Query: 229 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 408
PQ +++ + FE + PA Y+ QAV +A+ ++T +++D G + P+ +G +
Sbjct: 113 PQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLII 172
Query: 409 PHAILRLDLAGRDLTDYLMKILTERGYSF 495
I + LAG L + ++ F
Sbjct: 173 RKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 41.9 bits (94), Expect = 7e-05
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +2
Query: 14 HQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 187
+ GV + ++ YV DE Q I + +K +GI+ +W+ W +L+V
Sbjct: 39 YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVN 98
Query: 188 PEEHPVLLTEAPLNPKANREKM 253
P E+ +++TE NP++ R+++
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQI 120
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +1
Query: 346 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 492
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
Score = 28.7 bits (61), Expect = 0.69
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 516 IVRDIKEKLCYVALDFEQEM 575
IV +IKE +CYV+ +F+++M
Sbjct: 214 IVNEIKESVCYVSQNFKEDM 233
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.056
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 287 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 421
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 0.91
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 284 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 421
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 421
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 421
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.9 bits (69), Expect = 0.074
Identities = 15/79 (18%), Positives = 39/79 (49%)
Frame = +1
Query: 259 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 438
I+F + + +++ + + +G + V+D G + + EG +P++ ++++
Sbjct: 265 ILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYG 324
Query: 439 GRDLTDYLMKILTERGYSF 495
G D+T MK+L + +
Sbjct: 325 GDDITLLFMKLLMRSHFPY 343
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.097
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 421
SC+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 421
SC+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 28.7 bits (61), Expect = 0.69
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Frame = +2
Query: 212 TEAPLNPKANREKMTRSCSKHSTRPPCTSP-------SKPCSRCTRPVVPPVS-CWTPAT 367
T P+ P + T S +T CT+ S S P VPP S T
Sbjct: 203 TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP 262
Query: 368 VSPTPCPSTKDTHSPTPS 421
+ PT ST SP P+
Sbjct: 263 IPPTSTSSTDTNSSPLPT 280
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPC-PSTKDTHSPTP 418
SC+ ++ PP + + P + P VPP S TP T T C ST ++ TP
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTT--TNCTTSTSVPYTSTP 439
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Frame = +2
Query: 212 TEAPLNPKANREKMTRSCSKHSTRPPCTSPSK--PCSRCTRPVVPPVSCWTPATVSPTPC 385
T P+ P + T S +T CT+ + P T PV P TV PT
Sbjct: 259 TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTP--------TVPPT-- 308
Query: 386 PSTKDTHSPTP 418
ST T +P P
Sbjct: 309 -STSSTSTPPP 318
Score = 25.4 bits (53), Expect = 6.4
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = +2
Query: 212 TEAPLNPKANREKMTRSCSKHSTRPPCTSPSK--PCSRCTRPVVPPVSCWTPATVSPTPC 385
T P P + T S ST CT+ + P T PV P TV PT
Sbjct: 313 TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP--------TVPPT-- 362
Query: 386 PSTKDTHSPTP 418
ST T +P P
Sbjct: 363 -STSSTSTPPP 372
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 260 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 421
S S ST PP S S + + + SC T ++ PT +T T + P+
Sbjct: 363 STSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 30.3 bits (65), Expect = 0.22
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 167 YNELRVAPEEHPVLLTEAPLNPK-ANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPP 343
Y+EL +A +E P L P PK A++ K + K + S KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENN---IASFQKPSSKATRPYIPS 77
Query: 344 VSCWTPATVSPTPCP 388
+ T +V P P P
Sbjct: 78 YTRLT-YSVPPLPIP 91
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 308 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 412
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 444 RPHRLPHEDPHRARLLVHYHRRREIVRDIKEKLCYVALDFEQEMATAAFQQ 596
RP + P DPH + L Y + +++ KE LD +++ F++
Sbjct: 263 RPQKPPQIDPHSSSLADEYRESNKRLQESKESCARFILDCDRKYFNTEFEK 313
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 164 FYNELRVAPEEHPVLLTE--APLNPKANREKMTRSCSKHSTRP 286
+Y L E+HP+LLT+ A L P+ + ++ R K P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 28.3 bits (60), Expect = 0.91
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 100 FEGQDTSFALCLISYIRVLLSHTDHHA-LMAARA 2
+EG+DT+ +Y+R++L TD A ++AA+A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKATVLAAKA 107
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Frame = +2
Query: 158 HTFYNELRVAPEEHPVLL---TEAPLNPK----ANREKMTRSCSKHSTRPPCTSPSKPCS 316
H +N +P +P L T P NP A + S+H + +PS +
Sbjct: 201 HPIHNHPYSSPTSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINN 260
Query: 317 RCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 412
P+ P ++ W P T PT P + + + P
Sbjct: 261 HTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 308 PCSRCTRPVVPPVSCWTPATVSPTPCPST 394
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +2
Query: 218 APLNPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 391
+P++P ANR R S PP + KP + R V S SP P PS
Sbjct: 146 SPISPSANRNDSKRQASSFRRSPPSSVHMKPSAFNGRKVSRRPSS------SPPPIPS 197
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 284 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 391
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 505 AGGKSFVTSRRSCATSLLTSSRKWPPLHSSS 597
A G S++T RRS T++L SS PLHS+S
Sbjct: 406 ASGLSWLT-RRSVFTAILESSLIINPLHSTS 435
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 2.8
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +2
Query: 143 EKIWHHTFYNELRVAPEEHPVLLTE-APLNPKANREKMTRSCSKHSTRPPCTSPSKPCSR 319
E+I T E P H + T AP+ PK ++ + S T P TS + P +
Sbjct: 784 EEIQRLTMLLEPHAVPPIHQIKQTGYAPVQPKTSQ-----ASSILPTVPRTTSYTSPYAT 838
Query: 320 CTRPVVPPVSCWTPATVSPTPCPSTKDT 403
+ + TPA V P P PST T
Sbjct: 839 TSSHI-------TPADVHPLPPPSTSTT 859
Score = 26.6 bits (56), Expect = 2.8
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Frame = +2
Query: 206 LLTEAPLNPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWT---PATVSP 376
+L + P+ A RS ++ + S+ S T P PP + T PA SP
Sbjct: 867 MLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASP 926
Query: 377 TPCPSTKDTHSPTPSCVWT*PV 442
P + H PT S PV
Sbjct: 927 PPPKVGETYHPPTASGTRVPPV 948
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 324 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 476
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 218 APLNPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPV---VPPVSCWTPATVSPTPCP 388
AP+ PKA + PP P + PV +P V+ P++V+P P
Sbjct: 1456 APVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAP 1515
Query: 389 ST 394
S+
Sbjct: 1516 SS 1517
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +2
Query: 209 LTEAPLNPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCP 388
L P PK E+ S S+ + +P +PS P +P PV P+ P P
Sbjct: 482 LNPPPAMPKVFPERDISSASQKAAQPSVITPSVP-----QPPAAPVVPEAPSVHQPPAAP 536
Query: 389 STKDTHS 409
+ S
Sbjct: 537 VAPEVPS 543
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 230 PKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCW-TPATVSPTPCPSTKDTH 406
PK+N TR + R C SPS + + P S P T+SP+ PS T+
Sbjct: 376 PKSNSVDYTRLDNLEHMRQSCISPSG--TNFSPSCYSPESLMQQPLTLSPSSIPSGLPTY 433
Query: 407 SPTPSCVWT 433
+ S + T
Sbjct: 434 AHVNSPLGT 442
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +3
Query: 390 LRRIRTPPRHPASGLS----RSRPHRLPH 464
+R++R P ASG++ +PHR PH
Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 288 HVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPR 416
+VR HP A+ +R H Y +G C+ ++ R+ P+
Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSGNIIECMAASDNVIRLGFTPK 290
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 290 CTSPSKPCSRCTRPVVPPV-SCWTPATVSPTPCPSTKDTHSPTPSCVWT 433
C +PS+ C + PV S T ++++PTP ++ T +PT + T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 71 VPHLLHKSPSVPYRPSRPDGGS 6
+ L+ K+PS PY SRP +
Sbjct: 306 IDQLISKAPSYPYSSSRPSASA 327
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 23 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 109
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,634
Number of Sequences: 5004
Number of extensions: 60045
Number of successful extensions: 258
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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