Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060706.seq
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    44   1e-05
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    29   0.57 
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    28   1.3  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   9.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.2  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   9.2  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
 Frame = +2

Query: 254 KKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR--XXX 427
           KK++ E +  D EDESL+K+K +L      G      +D R V++ KL+L V GR     
Sbjct: 32  KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDV 88

Query: 428 XXXXXXXXXXXKKQVFVIKEGVQYRIRSILSFNARSCTV*STCRRPTDWGVPVDKMTHMV 607
                      +K+ F IKEG +++I           +     +     G  VDK + M+
Sbjct: 89  NMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMI 148

Query: 608 GFLSP 622
           G   P
Sbjct: 149 GSYGP 153


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 254  KKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVE 361
            +KT++E++   +++ SL  Y+E  L + QA  V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 175 LENLK*PIHPKRIQRKKKSNPHISHLQE 258
           L + + PI PK     +K NP+ISHL+E
Sbjct: 493 LRHTEPPIIPKLAPIDEKGNPNISHLKE 520


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 469 GIRDKGGCTIPNKVDFIVQ 525
           GIRDKGG  I NK D  +Q
Sbjct: 85  GIRDKGGVEISNKNDPYIQ 103


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 275 GSPLWSSWRWLI*GFDFFFLCILFGCMGYF 186
           G  +WSSW+ L  G+D  F  +    +G +
Sbjct: 282 GENMWSSWKHLTQGYDHLFKKVTIVLVGKY 311


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 579 TPQSVGLLHVLQTVHDLALNDKIDLIR 499
           T + +  + ++Q  H + L +K+DLIR
Sbjct: 150 TSEHLAAIEIMQLKHIIILQNKVDLIR 176


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 525  LNDKIDLIRYCTPSFITNTCFL 460
            L DK+ ++R C PS +  TC L
Sbjct: 1223 LRDKVHILRDCVPSLL-ETCLL 1243


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 DQEDESLRKYKEALLGQAQAGAVIV 358
           D+  E+++ YK ALLG     +++V
Sbjct: 454 DRPQEAIKSYKRALLGSQTNSSILV 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,057
Number of Sequences: 5004
Number of extensions: 44495
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)