Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060706.seq
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 58 4e-09
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 46 3e-05
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 42 5e-04
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 29 2.4
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 29 3.1
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 28 5.4
07_01_1196 - 11369673-11369693,11369737-11370270 28 5.4
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 58.4 bits (135), Expect = 4e-09
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Frame = +2
Query: 260 TIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXXXXX 433
+I+E L D+EDESLR++KE LLG +V +EPD V + L + GR
Sbjct: 97 SIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPDVLL 152
Query: 434 XXXXXXXXXKKQVFVIKEGVQYRIRSILSFNARSCTV*STCRRPTDW--GVPVDKMTHMV 607
K+ F +KEG YR++ +F+ S V T W G+ VDK M+
Sbjct: 153 PLPVEPSNSKEPWFTLKEGSTYRLK--FTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEML 210
Query: 608 GFLSPQ 625
G SPQ
Sbjct: 211 GTFSPQ 216
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Frame = +2
Query: 260 TIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXXXXX 433
+I++ L D++DESLR++KE LLG +V +EPD V + LA+ GR
Sbjct: 82 SIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGR-PDIF 136
Query: 434 XXXXXXXXXKKQVFVIKEGVQYRIRSILSFNARSCTV*STCRRPTDWGVPVDKMTHMVGF 613
K F +KEG Y+++ S + + G+ VD M+G
Sbjct: 137 LPLPVEPNAKGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEMLGT 196
Query: 614 LSPQ 625
SPQ
Sbjct: 197 FSPQ 200
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 41.5 bits (93), Expect = 5e-04
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +2
Query: 263 IEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXX 442
++E L D++DESLR++KE LLGQ + E +P VK L L ++
Sbjct: 46 LKEQLELDKDDESLRRWKEQLLGQVDT-EQLGETAEPE---VKVLNLTILSPDRPDLVLP 101
Query: 443 XXXXXXKK-QVFVIKEGVQYRIRSILSFNARSCTV*STCRRPTDW--GVPVDKMTHMVGF 613
+K F +K+G Y R SF + V T W GV V+ M+G
Sbjct: 102 IPFVPDEKGYAFALKDGSTYSFR--FSFIVSNNIVSGLKYTNTVWKTGVRVENQKVMLGT 159
Query: 614 LSPQ 625
SPQ
Sbjct: 160 FSPQ 163
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 211 IQRKKKSNPHISHLQEDHRGDPCC*PRG*VPSEVQGSTAWTSPSRRCHC*TG*SSQSDSQ 390
++R S P SHLQ ++ CC R + + S + C C TG SS + S+
Sbjct: 491 VERASVSQPVSSHLQSEYEAGSCCNTRN-SSNNKKESVRSEDEAGSC-CNTGSSSNNHSE 548
Query: 391 E 393
E
Sbjct: 549 E 549
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 257 KTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVV 412
K + + AAD++ KYK LG + AV+V PD + + L L V
Sbjct: 197 KALLRVQAADRKYVHKFKYKGVELGVILSYAVLVHPDTAARASISNLQLVTV 248
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 7 EPPGSIVVRHFFGLKNLETANRCKFYNYLVFKC 105
E G + R+ ++LET +C F NYL+ C
Sbjct: 184 EEGGVLATRYLKSGESLETGKKCHFPNYLIEIC 216
>07_01_1196 - 11369673-11369693,11369737-11370270
Length = 184
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 302 GTHPLGQQQGSPLWSSWRW 246
GT G+ GS WSSW W
Sbjct: 57 GTVAFGKVYGSAAWSSWEW 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,225
Number of Sequences: 37544
Number of extensions: 286653
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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