Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060706.seq
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...    58   4e-09
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...    58   4e-09

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
 Frame = +2

Query: 254 KKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 433
           +K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+     
Sbjct: 21  QKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSF 77

Query: 434 XXXXXXXXXKKQVFV-IKEGVQYRIRSILSFNARSCTV*STCRRPTDWGVPVDKMTHMVG 610
                       + V IKEG  YR+           +      +    G+ V+   +M+G
Sbjct: 78  DLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMMG 137

Query: 611 FLSPQ 625
             +P+
Sbjct: 138 SYAPK 142


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
 Frame = +2

Query: 254 KKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 433
           +K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+     
Sbjct: 21  QKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSF 77

Query: 434 XXXXXXXXXKKQVFV-IKEGVQYRIRSILSFNARSCTV*STCRRPTDWGVPVDKMTHMVG 610
                       + V IKEG  YR+           +      +    G+ V+   +M+G
Sbjct: 78  DLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMMG 137

Query: 611 FLSPQ 625
             +P+
Sbjct: 138 SYAPK 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,309
Number of Sequences: 27780
Number of extensions: 253097
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)