Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060706.seq
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p... 54 8e-08
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p... 43 1e-04
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p... 41 8e-04
At4g04955.1 68417.m00720 amidohydrolase family protein similar t... 28 6.0
At2g03470.2 68415.m00306 myb family transcription factor / ELM2 ... 27 7.9
At2g03470.1 68415.m00305 myb family transcription factor / ELM2 ... 27 7.9
>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 240
Score = 54.0 bits (124), Expect = 8e-08
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Frame = +2
Query: 260 TIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXX 439
TI+E L D++DESLRK+KE LLG I E DP +V + LA+ GR
Sbjct: 69 TIKEHLEKDKDDESLRKWKEQLLGSVDV-TNIGETLDP-EVRIDSLAIISPGR-PDIVLL 125
Query: 440 XXXXXXXKKQVFVIKEGVQYRIRSILSFNARSCTV*STCRRPTDW--GVPVDKMTHMVGF 613
K F +KEG +Y ++ +F+ + V T W GV VD+ M+G
Sbjct: 126 VPENGNPKGMWFTLKEGSKYNLK--FTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGT 183
Query: 614 LSPQ 625
SPQ
Sbjct: 184 FSPQ 187
>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 223
Score = 43.2 bits (97), Expect = 1e-04
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = +2
Query: 263 IEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXX 442
++E L D++DESLR++KE LLG V PD K++ L + R
Sbjct: 53 LKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKIL--DLTIRSPDREEMVLTIP 110
Query: 443 XXXXXXKK-QVFVIKEGVQYRIRSILSFNARSCTV*STCRRPTDW--GVPVDKMTHMVGF 613
K F IKEG +Y + + +F + V T W GV VD M+G
Sbjct: 111 EDGLPNPKGPWFTIKEGSKYTL--VFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGT 168
Query: 614 LSPQ 625
SPQ
Sbjct: 169 FSPQ 172
>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 223
Score = 40.7 bits (91), Expect = 8e-04
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +2
Query: 263 IEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXX 442
++E L D++DESLR++KE LLG V PD K++ L + R
Sbjct: 53 LKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILT--LTIRSPDREDMVLTIP 110
Query: 443 XXXXXXKK-QVFVIKEGVQYRIRSILSFNARSCTV*STCRRPTDW--GVPVDKMTHMVGF 613
K F +KEG +Y + I +F + V T W G+ V M+G
Sbjct: 111 ENGKPASKGPWFTLKEGSKYTL--IFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGT 168
Query: 614 LSPQ 625
SPQ
Sbjct: 169 FSPQ 172
>At4g04955.1 68417.m00720 amidohydrolase family protein similar to
SP|P32375 Allantoinase (EC 3.5.2.5) {Saccharomyces
cerevisiae}; contains Pfam profile PF01979:
Amidohydrolase family
Length = 506
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 442 WGLDRPQK-AGIRDKGGCTIPNKVDFIV 522
W DRP K AG+ KG T+ D +V
Sbjct: 416 WWSDRPSKLAGLHSKGAVTVGKHADLVV 443
>At2g03470.2 68415.m00306 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 449
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +2
Query: 164 NEYVWRT*SSPYTRRGYRGRRNQILI*ATSKKTIEEILAADQEDESLRKYKEALLGQAQA 343
+++ W+ YT + R Q+L+ + + I E + + D+S + KE L G+
Sbjct: 99 SDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMR 158
Query: 344 GAVIVEPD 367
VI D
Sbjct: 159 KCVIPMSD 166
>At2g03470.1 68415.m00305 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 450
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +2
Query: 164 NEYVWRT*SSPYTRRGYRGRRNQILI*ATSKKTIEEILAADQEDESLRKYKEALLGQAQA 343
+++ W+ YT + R Q+L+ + + I E + + D+S + KE L G+
Sbjct: 100 SDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMR 159
Query: 344 GAVIVEPD 367
VI D
Sbjct: 160 KCVIPMSD 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,889
Number of Sequences: 28952
Number of extensions: 233701
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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