Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060705.seq
         (439 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VQF5 Cluster: Prephenate dehydratase; n=2; Candidatus...    33   2.0  
UniRef50_Q8IL14 Cluster: Helicase, truncated, putative; n=3; Euk...    33   2.0  
UniRef50_A5C7G4 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_Q7VQF5 Cluster: Prephenate dehydratase; n=2; Candidatus
           Blochmannia|Rep: Prephenate dehydratase - Blochmannia
           floridanus
          Length = 298

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -3

Query: 329 HKILQILQXYCHRXQIETNYRRICCSXKFGTTVSTAIIPVTRH 201
           + IL+ILQ Y    +I+ N+ R+CCS     T ++ I+ +T H
Sbjct: 222 YSILKILQFY----KIKINFLRLCCSLLPNNTTNSIILEITAH 260


>UniRef50_Q8IL14 Cluster: Helicase, truncated, putative; n=3;
           Eukaryota|Rep: Helicase, truncated, putative -
           Plasmodium falciparum (isolate 3D7)
          Length = 352

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 353 QNMRRPDWXSVSLXPFXKNFYXPHPXVLK 439
           +N+   DW +++L PF KNFY  H  + K
Sbjct: 57  KNLAPIDWKTINLVPFEKNFYKEHEDISK 85


>UniRef50_A5C7G4 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 913

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 192 KLXMSGYWNNSRGNGGSKFGGATNSAIIRLDLATVAVXLEDLEDFVGKKNSLEVRTC 362
           K  + GYWN       +  GG+ +  I+R+ +++ +   E+L+DF  KKN+L  R+C
Sbjct: 473 KRLLKGYWNVGHQKALTLPGGSPD--IVRVSISSAS---EELDDFSPKKNTLS-RSC 523


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,045,728
Number of Sequences: 1657284
Number of extensions: 3534941
Number of successful extensions: 8158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8150
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)