Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060705.seq
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    30   0.18 
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   0.96 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   8.9  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 356 NMRRPDWXSVSLXPFXKNFYXPHPXV 433
           N+ + DW + +L PF K+FY  H  V
Sbjct: 68  NLVKKDWKNETLIPFQKDFYKEHENV 93


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = +3

Query: 210 YWNNSRGNGGSKFGGATNSAIIRLDLATVAVXLEDLEDFVGKKNSLEVRTCVAQIGXLFH 389
           YWN  +       GG     I + D+      L  L   +GK  +L    C A IG +  
Sbjct: 13  YWNGVQPTVDGMLGGLGTGRIPQTDVVGSRTFLNRLNYRIGKIENLVAADCGAGIGRVTE 72

Query: 390 SXL 398
           + L
Sbjct: 73  NVL 75


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +3

Query: 276 RLDLATVAVXLEDLEDFVGKKNSLEVRTCVAQIGXLFHSXLSTKT 410
           + D++ +   +  + +    +NS+++ +C+ Q+G  F    S+ T
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCFFKIGSSIT 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,872
Number of Sequences: 5004
Number of extensions: 14538
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)